Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,882,028 – 2,882,136 |
Length | 108 |
Max. P | 0.567358 |
Location | 2,882,028 – 2,882,136 |
---|---|
Length | 108 |
Sequences | 5 |
Columns | 108 |
Reading direction | reverse |
Mean pairwise identity | 92.04 |
Mean single sequence MFE | -23.34 |
Consensus MFE | -17.82 |
Energy contribution | -18.22 |
Covariance contribution | 0.40 |
Combinations/Pair | 1.00 |
Mean z-score | -1.60 |
Structure conservation index | 0.76 |
SVM decision value | 0.07 |
SVM RNA-class probability | 0.567358 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2882028 108 - 23771897 CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCAGCUGAGUGGCAGUUCCAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCCAAAAC .((((((((......)))))..((....)).......))).......(((((..........((((((............)))))).............))))).... ( -21.70) >DroSec_CAF1 126546 108 - 1 CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGAGUGGCAGUCACAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCGAAAGU ....(((((......)))))..((....))....((((((.((...(((.....))).....((((((............))))))..............)))))))) ( -23.60) >DroSim_CAF1 117385 108 - 1 CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGAGUGGCAGUCACAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCGAAAGC ....(((((......)))))..((....)).........(((((....))))).........((((((............))))))..............((....)) ( -23.40) >DroEre_CAF1 133594 108 - 1 CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGACUGGCAGUCACAGAUAUUGCCUGGAUCACAACAAAGCCAAAUUCAUACAACUAUGCGAAAAC .((((((((......)))))....((((((..(((...((((.((((.....))))))))..)))))))))................))).................. ( -23.60) >DroYak_CAF1 134300 102 - 1 CGAAGUCCAAAUUUAUGGACAACCUUCAGGAUCAACUUUCUGCUGAGUGGCAGUCAAAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAGUACAAAUGUGC------ .((.(((((......)))))..((....)).))..(((((((((....)))))..))))...((((((............))))))....((((....))))------ ( -24.40) >consensus CGAAGUCCAAAUUUAUGGACAACCUUCAGGACCAACUUUCUGCUGAGUGGCAGUCACAGAUAUUGGCUGGAUCAUAACAAAGCCAAAUAAAUACAAAUAUGCGAAAAC ....(((((......)))))..((....)).........(((((....))))).........((((((............))))))...................... (-17.82 = -18.22 + 0.40)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:36 2006