Locus 967

Sequence ID 3L_DroMel_CAF1
Location 2,877,793 – 2,877,894
Length 101
Max. P 0.717462
window1487

overview

Window 7

Location 2,877,793 – 2,877,894
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 83.27
Mean single sequence MFE -17.28
Consensus MFE -12.16
Energy contribution -13.16
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -1.84
Structure conservation index 0.70
SVM decision value 0.39
SVM RNA-class probability 0.717462
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2877793 101 + 23771897
UUUAUGACUAGGUAAAUAUUUUAACAGUCUAUAAAAUAAUGUGAAAAUAUUUUUUCGCAUACAUUAUCAAACGCUAUUCUCUGCGUUGCGCAUAGGCAACA
..((((....(((((.(((((((........)))))))(((((((((....)))))))))...))))).(((((........)))))...))))(....). ( -21.60)
>DroSec_CAF1 122411 99 + 1
-UAUUGACUACCUAAAUAUUUCAACCGUUUAUAAAAUAAUGUGAAAAUAUGUUUUCGCAUACAUUAUCAAACGCUAUUAUCUGUGUUGCGCAUA-GCAACA
-........................(((((((((....(((((((((....)))))))))...)))).)))))..........((((((.....-)))))) ( -18.00)
>DroSim_CAF1 113209 100 + 1
UUUAUGACUACCUAAAUAUUUCAACAGUUUAUAAAAUAAUGUGAAAAUAUAUUUUCGCAUACAUUAUCAAACGCUAUUAUCUGCGUUGCGCAUA-GCAACA
..........................((((((((....(((((((((....)))))))))...)))).))))((........))(((((.....-))))). ( -18.50)
>DroEre_CAF1 129302 90 + 1
UCUAUGACAACCCAAAUAU----AAAGUUUACAAAAUAAUGUGAAAAGAUGUUCUCGCAUACAUUAUCAAACGCAA------ACGUUGCGCAUA-GCAACA
....(((............----....((((((......))))))..(((((........))))).))).......------..(((((.....-))))). ( -13.30)
>DroYak_CAF1 128410 97 + 1
UCUAUAA---CUAAAAUAUUUCAACAGUUUAUAAAAUAAUGUGCAAAUGUGUUUUCGCAUACAUUAUCAAACGCCAUUCUCUGCGUUGCGGAUA-GCAAGA
.......---...............................(((..(((((....)))))....((((.(((((........)))))...))))-)))... ( -15.00)
>consensus
UUUAUGACUACCUAAAUAUUUCAACAGUUUAUAAAAUAAUGUGAAAAUAUGUUUUCGCAUACAUUAUCAAACGCUAUUAUCUGCGUUGCGCAUA_GCAACA
..........................((((((((....(((((((((....)))))))))...)))).))))............(((((......))))). (-12.16 = -13.16 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:35 2006