Locus 965

Sequence ID 3L_DroMel_CAF1
Location 2,867,712 – 2,867,813
Length 101
Max. P 0.636547
window1484

overview

Window 4

Location 2,867,712 – 2,867,813
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 73.42
Mean single sequence MFE -29.58
Consensus MFE -20.59
Energy contribution -20.37
Covariance contribution -0.22
Combinations/Pair 1.33
Mean z-score -0.95
Structure conservation index 0.70
SVM decision value 0.21
SVM RNA-class probability 0.636547
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2867712 101 + 23771897
GCGUUUUUGCACAAACUUCUGCUCGCAUCUCGAGUUGUAGCCGUUGGGCAAUUCGCACAGGUUCGAGCAGGUGUUCGAGCUGGAA-------------AAUAAA-CGGAAUCGGA-----
(((....)))...(((.((((((((.((((((((((...(((....)))))))))...)))).)))))))).)))(((.(((...-------------......-)))..)))..----- ( -30.00)
>DroVir_CAF1 140410 98 + 1
ACGUUUUUGUACGAACUUCUGCUCGCACCUGGAGUUGUAUCCAUUGGGCAGAUCGCACAGGUUUGAGCAUGUGUUUGAGCUAAAA-------------U----GGCAAGAAAUUU-----
.((((((.((.(((((...((((((.(((((..((.((..((....))...)).)).))))).))))))...))))).)).))))-------------)----)...........----- ( -29.40)
>DroGri_CAF1 133847 102 + 1
GCGUUUUUGUACGAACUUCUGCUCGCACCUGGAGUUAUAUCCAUUGGGCAAAUCGCACAGGUUCGAGCAUGUGUUUGAGCUGAAA-------------AACAGGUCAGGAAAAUU-----
..((((((((.(((((...((((((.(((((((......))).....((.....))..)))).))))))...))))).))..)))-------------)))..............----- ( -28.60)
>DroWil_CAF1 104751 104 + 1
ACGUUUUUGUACGAAUUUCUGCUCACAUCUCGAGUUGUAGCCAUUUGGCAGUUCGCAAAGGUUCGAGCAGGUGUUCGAGCUAAAAUGC-----A----GGAAAA-UUG-AAAUGA-----
.((((((.((.(((((.(((((((..(((((((..(...(((....))))..)))...))))..))))))).))))).)).)))))).-----.----......-...-......----- ( -28.70)
>DroMoj_CAF1 135216 92 + 1
ACGUUUUUGUACAAACUUCUGCUCGCACCUGGAAUUGUAGCCAUUGGGCAGAUCGCACAGGUUCGAGCAUGUGUUUGAGCUGAAA-------------G----AGAUAG-----------
...((((.((.(((((...((((((.(((((........(((....)))........))))).))))))...))))).)).))))-------------.----......----------- ( -29.59)
>DroAna_CAF1 102628 119 + 1
GCGUUUUUGCACAAACUUCUGCUCGCAUCUCGAGUUGUAGCCGUUGGGCAGUUCGCACAGGUUGGAGCAGGUGUUCGAGCUGAAACGAUAAAGCGGAAAACGGA-AAGAAUUGGACUCGG
.(((((((((.....((...(((((.....)))))...)).((((...((((((((((..((....))..)))..))))))).)))).....)).)))))))..-............... ( -31.20)
>consensus
ACGUUUUUGUACAAACUUCUGCUCGCACCUCGAGUUGUAGCCAUUGGGCAGAUCGCACAGGUUCGAGCAGGUGUUCGAGCUGAAA_____________AA_A_A_CAGGAAAGGA_____
...((((.((.(((((...((((((.((((.........(((....))).........)))).))))))...))))).)).))))................................... (-20.59 = -20.37 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:32 2006