Locus 962

Sequence ID 3L_DroMel_CAF1
Location 2,858,955 – 2,859,045
Length 90
Max. P 0.783203
window1479

overview

Window 9

Location 2,858,955 – 2,859,045
Length 90
Sequences 4
Columns 90
Reading direction forward
Mean pairwise identity 97.22
Mean single sequence MFE -25.33
Consensus MFE -22.46
Energy contribution -23.27
Covariance contribution 0.81
Combinations/Pair 1.04
Mean z-score -2.10
Structure conservation index 0.89
SVM decision value 0.56
SVM RNA-class probability 0.783203
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2858955 90 + 23771897
GUGAAGCCACAGGACGAAAACAGAAACGGAAACAGAAACAGGAGCAGAAUCUGGGGUUUCUGCUGUAUCCAGAGGGAAACCAUCUACCGG
(((....))).((..............(((.((((...(((((((..........))))))))))).)))(((((....)).))).)).. ( -24.70)
>DroSec_CAF1 103696 90 + 1
GUGAAGCCACAGGACGAAAACAGGAACGGAAACAGAAACAGGAGCAGAAUCUGGGGUUUCAGCUGUAUCCAGAGGGAAACCAUCUACCGG
(((....))).((.........(((((((.....(((((.(((......)))...)))))..)))).)))(((((....)).))).)).. ( -23.70)
>DroSim_CAF1 94378 90 + 1
GUGAAGCCACAGGACGAAAACAGGAACGGAAACAGAAACAGGAGCAGAAUCUGGGGUUUCUGCUGUAUCCAGAGGGAAACCAUCUACCGG
(((....))).((.........(((((((...(((((((.(((......)))...))))))))))).)))(((((....)).))).)).. ( -27.30)
>DroEre_CAF1 107371 90 + 1
GUGAAGCCACAGGACGAAAACAGGAACGGAAACAGAAACAGGAGCAGAAUCUGGGGUUUCUGGCAUAUCCAGAGGGAAACCAUCUACCGG
(((....))).((.........(((...(...(((((((.(((......)))...))))))).)...)))(((((....)).))).)).. ( -25.60)
>consensus
GUGAAGCCACAGGACGAAAACAGGAACGGAAACAGAAACAGGAGCAGAAUCUGGGGUUUCUGCUGUAUCCAGAGGGAAACCAUCUACCGG
(((....))).((.........(((((((...(((((((.(((......)))...))))))))))).)))(((((....)).))).)).. (-22.46 = -23.27 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:27 2006