Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,858,788 – 2,858,879 |
Length | 91 |
Max. P | 0.774562 |
Location | 2,858,788 – 2,858,879 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 99 |
Reading direction | forward |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -29.82 |
Consensus MFE | -22.06 |
Energy contribution | -22.86 |
Covariance contribution | 0.80 |
Combinations/Pair | 1.00 |
Mean z-score | -2.23 |
Structure conservation index | 0.74 |
SVM decision value | 0.54 |
SVM RNA-class probability | 0.774562 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2858788 91 + 23771897 CGGUUUAGAAUCUAGGUGACUGCGAGGGCUGUUUUUUGGCAGUA--UAUA----CAUAUGUG--UAUUAUGUGGAGGGGCAGGGAGCCUCACAGAACGA ..((((.(....(((....))).((((.(((((((((.(((..(--((((----(....)))--)))..))).)))))))))....)))).).)))).. ( -27.30) >DroSec_CAF1 103542 95 + 1 CGGUUUAGAAUCUAGGUGACUGCGAGGGCUGUUUUUUGGCAGUA--UAUACAUACAUAUGUG--UAUUGUGUGGAGGGGCAGGGAGCCUCACAGGACGA ..(((..(....(((....))).((((.(((((((((.(((..(--(((((((....)))))--)))..))).)))))))))....)))).)..))).. ( -29.50) >DroSim_CAF1 94224 95 + 1 CGGUUUAGAAUCUAGGUGACUGCGAGGGCUGUUUUUUGGCAGUA--UAUACAUACAUAUGUG--UAUUAUGUGGAGGGGCAGGGAGCCUCACAGGACGA ..(((..(....(((....))).((((.(((((((((.(((..(--(((((((....)))))--)))..))).)))))))))....)))).)..))).. ( -29.20) >DroEre_CAF1 107216 91 + 1 CGGUAUAGAAUCUAGGUGACUGCGAGGGCUGUUUUUUGGCAGUA--UAUA----CAUACGUG--UAUUAUGUGGAGGGGCAGGGAGCCUCGCAGGACGA ...............((..((((((((.(((((((((.(((..(--((((----(....)))--)))..))).)))))))))....)))))))).)).. ( -32.30) >DroYak_CAF1 108866 95 + 1 CGGUAUAGAAUCUAGGUGACUGCGAGGGCUGUUUUUUGGCAGUACAUAUA----CAUAUGUGUGUUUUAUGUAGAGGGGCAGGGAGCCUCGCAGGACGA ...............((..((((((((.(((((((((.(((..(((((((----....)))))))....))).)))))))))....)))))))).)).. ( -30.80) >consensus CGGUUUAGAAUCUAGGUGACUGCGAGGGCUGUUUUUUGGCAGUA__UAUA____CAUAUGUG__UAUUAUGUGGAGGGGCAGGGAGCCUCACAGGACGA ...............((..(((.((((.(((((((((.((((((((((((........)))))))))..))).)))))))))....)))).))).)).. (-22.06 = -22.86 + 0.80)
Location | 2,858,788 – 2,858,879 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 99 |
Reading direction | reverse |
Mean pairwise identity | 92.45 |
Mean single sequence MFE | -16.34 |
Consensus MFE | -12.92 |
Energy contribution | -12.88 |
Covariance contribution | -0.04 |
Combinations/Pair | 1.07 |
Mean z-score | -1.62 |
Structure conservation index | 0.79 |
SVM decision value | 0.38 |
SVM RNA-class probability | 0.711862 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2858788 91 - 23771897 UCGUUCUGUGAGGCUCCCUGCCCCUCCACAUAAUA--CACAUAUG----UAUA--UACUGCCAAAAAACAGCCCUCGCAGUCACCUAGAUUCUAAACCG ..(..((((((((...................(((--((....))----))).--..(((........))).)))))))).)................. ( -15.10) >DroSec_CAF1 103542 95 - 1 UCGUCCUGUGAGGCUCCCUGCCCCUCCACACAAUA--CACAUAUGUAUGUAUA--UACUGCCAAAAAACAGCCCUCGCAGUCACCUAGAUUCUAAACCG .....((((((((................(((.((--((....)))))))...--..(((........))).))))))))................... ( -15.70) >DroSim_CAF1 94224 95 - 1 UCGUCCUGUGAGGCUCCCUGCCCCUCCACAUAAUA--CACAUAUGUAUGUAUA--UACUGCCAAAAAACAGCCCUCGCAGUCACCUAGAUUCUAAACCG .....((((((((...................(((--((....))))).....--..(((........))).))))))))................... ( -15.20) >DroEre_CAF1 107216 91 - 1 UCGUCCUGCGAGGCUCCCUGCCCCUCCACAUAAUA--CACGUAUG----UAUA--UACUGCCAAAAAACAGCCCUCGCAGUCACCUAGAUUCUAUACCG .....((((((((...................(((--((....))----))).--..(((........))).))))))))................... ( -17.10) >DroYak_CAF1 108866 95 - 1 UCGUCCUGCGAGGCUCCCUGCCCCUCUACAUAAAACACACAUAUG----UAUAUGUACUGCCAAAAAACAGCCCUCGCAGUCACCUAGAUUCUAUACCG .....((((((((.............((((((..(((......))----).))))))(((........))).))))))))................... ( -18.60) >consensus UCGUCCUGUGAGGCUCCCUGCCCCUCCACAUAAUA__CACAUAUG____UAUA__UACUGCCAAAAAACAGCCCUCGCAGUCACCUAGAUUCUAAACCG .....((((((((...............((((.........))))............(((........))).))))))))................... (-12.92 = -12.88 + -0.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:26 2006