Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 345,829 – 345,930 |
Length | 101 |
Max. P | 0.877324 |
Location | 345,829 – 345,930 |
---|---|
Length | 101 |
Sequences | 4 |
Columns | 101 |
Reading direction | forward |
Mean pairwise identity | 91.42 |
Mean single sequence MFE | -35.05 |
Consensus MFE | -31.58 |
Energy contribution | -31.20 |
Covariance contribution | -0.38 |
Combinations/Pair | 1.11 |
Mean z-score | -1.75 |
Structure conservation index | 0.90 |
SVM decision value | 0.90 |
SVM RNA-class probability | 0.877324 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 345829 101 + 23771897 UCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAUAUGAGUGCUCUGCUGGAAUGCUUCAUCAUAUUUG ...(((((.(((((......)))))....(....)..))))).((((((((((((.(((((........).)))).))......))))))))))....... ( -33.50) >DroSim_CAF1 599 101 + 1 CCAGGGAAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCCAUAUGAGUGCUCUGCUAGGGUGCUUCAUCCUAUUUG .(((((..(((..(((((((((..((((.(....).((((((....).))))).))))...)))))))))))).))))).(((((((...))))))).... ( -34.10) >DroEre_CAF1 1198 101 + 1 CCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAAAAGAGUGCUCUGCUAGGAUGCUUUAUCCCAUUCG ...(((((.(((((......)))))....(....)..))))).((((((((((((.(((((((....))).)))).))......))))))))))....... ( -31.60) >DroYak_CAF1 1169 101 + 1 CCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAUGGGCGUGCUCUGCUCGGAUGCCUUAUCCCAUUCG ...(((((.(((((......)))))....(....)..))))).((((((((((((..(((((.....)))))..))((....))))))))))))....... ( -41.00) >consensus CCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAUAUGAGUGCUCUGCUAGGAUGCUUCAUCCCAUUCG ...(((((.(((((......)))))....(....)..))))).((((((((((((.(((((........).)))).))......))))))))))....... (-31.58 = -31.20 + -0.38)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:15 2006