Locus 96

Sequence ID 3L_DroMel_CAF1
Location 345,829 – 345,930
Length 101
Max. P 0.877324
window135

overview

Window 5

Location 345,829 – 345,930
Length 101
Sequences 4
Columns 101
Reading direction forward
Mean pairwise identity 91.42
Mean single sequence MFE -35.05
Consensus MFE -31.58
Energy contribution -31.20
Covariance contribution -0.38
Combinations/Pair 1.11
Mean z-score -1.75
Structure conservation index 0.90
SVM decision value 0.90
SVM RNA-class probability 0.877324
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 345829 101 + 23771897
UCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAUAUGAGUGCUCUGCUGGAAUGCUUCAUCAUAUUUG
...(((((.(((((......)))))....(....)..))))).((((((((((((.(((((........).)))).))......))))))))))....... ( -33.50)
>DroSim_CAF1 599 101 + 1
CCAGGGAAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCCAUAUGAGUGCUCUGCUAGGGUGCUUCAUCCUAUUUG
.(((((..(((..(((((((((..((((.(....).((((((....).))))).))))...)))))))))))).))))).(((((((...))))))).... ( -34.10)
>DroEre_CAF1 1198 101 + 1
CCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAAAAGAGUGCUCUGCUAGGAUGCUUUAUCCCAUUCG
...(((((.(((((......)))))....(....)..))))).((((((((((((.(((((((....))).)))).))......))))))))))....... ( -31.60)
>DroYak_CAF1 1169 101 + 1
CCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAUGGGCGUGCUCUGCUCGGAUGCCUUAUCCCAUUCG
...(((((.(((((......)))))....(....)..))))).((((((((((((..(((((.....)))))..))((....))))))))))))....... ( -41.00)
>consensus
CCAGGGCAACUGCUAUAUGGAGCAGCACAGGAAACAGUGUCCAGGUGAGGCAUAGUGCGCCUUCAAUAUGAGUGCUCUGCUAGGAUGCUUCAUCCCAUUCG
...(((((.(((((......)))))....(....)..))))).((((((((((((.(((((........).)))).))......))))))))))....... (-31.58 = -31.20 +  -0.38) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:15 2006