Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,857,565 – 2,857,661 |
Length | 96 |
Max. P | 0.786906 |
Location | 2,857,565 – 2,857,661 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 84.07 |
Mean single sequence MFE | -25.86 |
Consensus MFE | -21.57 |
Energy contribution | -21.57 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.92 |
Structure conservation index | 0.83 |
SVM decision value | 0.57 |
SVM RNA-class probability | 0.786906 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2857565 96 + 23771897 -------CUUGAGUCUGCUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUGCAAUUUGCGUGCUGCAAUUGCCCCG-UCCCCGGCCCU -------........(((.((((...(((((((..((((((................)))))).)))))))....)))).)))...(((...-.....)))... ( -26.99) >DroPse_CAF1 121939 98 + 1 UCUGCCACUCGUUUUCCAUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUACAAUUUGCGUGCUGCAAUUGCUGUG-U-----GCCCU ...................((((((.(((((((.(((.(((....((((.(((......))))))).....)))))).)))))))....)))-)-----))... ( -27.70) >DroSec_CAF1 102306 95 + 1 -------CUUGAGUCUUCUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUGCAAUUUGCGUGCUGCAAUUGCCCCG-UCCC-UGCCCU -------.....((((((((((......))))))).)))......((((.(((......)))))))((((((.((.....))))))))....-....-...... ( -24.00) >DroEre_CAF1 105975 90 + 1 -------CUUGAGUAUGCUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUGCAAUUUGCGUGCUGCAAUUGCCCCUGCCC-------U -------.....((((((.((((...(((((((..((((((................)))))).)))))))....)))).)))..)))........-------. ( -24.49) >DroYak_CAF1 107591 96 + 1 -------CUUGAGUGUGCUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUGCAAUUUGCGUGCUGCAAUUGCCCCUGCCCC-AGCCCU -------........(((.((((...(((((((..((((((................)))))).)))))))....)))).)))..............-...... ( -24.29) >DroPer_CAF1 122891 98 + 1 UCUGCCACUCGUUUUCCAUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUACAAUUUGCGUGCUGCAAUUGCUGUG-U-----GCCCU ...................((((((.(((((((.(((.(((....((((.(((......))))))).....)))))).)))))))....)))-)-----))... ( -27.70) >consensus _______CUUGAGUCUGCUGCACAUUGUUGCAGAACGACAAUUAAAGUCUGAUUAUUUUGUCGACUGCAAUUUGCGUGCUGCAAUUGCCCCG_UCC___GCCCU ...................(((....(((((((.(((.(((....((((.(((......))))))).....)))))).))))))))))................ (-21.57 = -21.57 + -0.00)
Location | 2,857,565 – 2,857,661 |
---|---|
Length | 96 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 84.07 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -20.72 |
Energy contribution | -20.50 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.05 |
Mean z-score | -1.97 |
Structure conservation index | 0.77 |
SVM decision value | 0.30 |
SVM RNA-class probability | 0.677609 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2857565 96 - 23771897 AGGGCCGGGGA-CGGGGCAAUUGCAGCACGCAAAUUGCAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAGCAGACUCAAG------- .((((((....-))).....((((.(((((....((((((.((((((..(((.......))).))))))..))))))...))))).)))).)))...------- ( -32.30) >DroPse_CAF1 121939 98 - 1 AGGGC-----A-CACAGCAAUUGCAGCACGCAAAUUGUAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAUGGAAAACGAGUGGCAGA ...((-----.-(((.((....)).(((((....((((((.((((((..(((.......))).))))))..))))))...)))))...........)))))... ( -25.50) >DroSec_CAF1 102306 95 - 1 AGGGCA-GGGA-CGGGGCAAUUGCAGCACGCAAAUUGCAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAGAAGACUCAAG------- .((((.-..((-(...((((((((.....)).)))))).)))(((((..(((.......))).))))).(((((((......)))))))).)))...------- ( -25.30) >DroEre_CAF1 105975 90 - 1 A-------GGGCAGGGGCAAUUGCAGCACGCAAAUUGCAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAGCAUACUCAAG------- .-------.....(((.....(((.(((((....((((((.((((((..(((.......))).))))))..))))))...))))).)))..)))...------- ( -25.20) >DroYak_CAF1 107591 96 - 1 AGGGCU-GGGGCAGGGGCAAUUGCAGCACGCAAAUUGCAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAGCACACUCAAG------- .(((.(-(..((....((....)).(((((....((((((.((((((..(((.......))).))))))..))))))...))))).)).)))))...------- ( -27.40) >DroPer_CAF1 122891 98 - 1 AGGGC-----A-CACAGCAAUUGCAGCACGCAAAUUGUAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAUGGAAAACGAGUGGCAGA ...((-----.-(((.((....)).(((((....((((((.((((((..(((.......))).))))))..))))))...)))))...........)))))... ( -25.50) >consensus AGGGC___GGA_CGGGGCAAUUGCAGCACGCAAAUUGCAGUCGACAAAAUAAUCAGACUUUAAUUGUCGUUCUGCAACAAUGUGCAGCAAACUCAAG_______ ................((....)).(((((....((((((.((((((..(((.......))).))))))..))))))...)))))................... (-20.72 = -20.50 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:23 2006