| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,854,511 – 2,854,603 |
| Length | 92 |
| Max. P | 0.991631 |
| Location | 2,854,511 – 2,854,603 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 108 |
| Reading direction | forward |
| Mean pairwise identity | 72.03 |
| Mean single sequence MFE | -34.50 |
| Consensus MFE | -16.38 |
| Energy contribution | -16.05 |
| Covariance contribution | -0.33 |
| Combinations/Pair | 1.26 |
| Mean z-score | -2.48 |
| Structure conservation index | 0.47 |
| SVM decision value | 2.28 |
| SVM RNA-class probability | 0.991631 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2854511 92 + 23771897 -CCAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUU---------GGCGUUGCCG------GCUGA -.....((((((((..........)))))))).((.(((((.(((..(((((((.((((....)))).)))))))...---------))))))))))------..... ( -35.80) >DroVir_CAF1 124498 82 + 1 -ACGCUGUCCUUGGAUUCCAUUUCCCAGGGACGUG--UAUCUGCCGUUCGAGUUUGAGUUUGAGUUCGAGUUGGCGUU---------GGCGUUG-------------- -(((((((((((((..........))))))))...--.....(((..((((..((......))..))))...)))...---------)))))..-------------- ( -27.50) >DroPse_CAF1 117891 95 + 1 -CCGCUAUCCUUGGACUCCAUUUCCCAAGGACGUGUAUAGCUUCCGUUGGAGUUCGAAUUGGAGUUUGAGUUGGCGUUUGCUGCGUUGGCG------------UUGGC -..((((...(..(((((((.((((((((((.((.....)).))).)))).....))).)))))))..)((..((((.....))))..)).------------.)))) ( -34.10) >DroYak_CAF1 104430 83 + 1 -CCAUUGUCCUUGGACUCCAUUUCCCAGGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGAGUU---------GG---------------CUGC -.((((((((((((..........))))))))).)))..((.(((..(((((((.((((....)))).)))))))...---------))---------------).)) ( -31.20) >DroAna_CAF1 88587 84 + 1 ACCCGAAUCCUUAGAUUCCAUUUCCCAAGGACGCGUGUAGCUGCCGUUUGAAUUGGAAUUGGAGUUUGAAUUCGGGUU---------GCU------G---------GA ((((((((..((((((((((.((((...(((((.((......))))))).....)))).)))))))))))))))))).---------...------.---------.. ( -31.60) >DroPer_CAF1 118852 107 + 1 -CCGCUAUCCUUGGACUCCAUUUCCCAAGGACGUGUAUAGCUUCCGUUGGAGUUCGAAUUGGAGUUUGAGUUGGCGUUUGCCGCGUUGGCGUUGGCGUUGGCGUUGGC -.(((((..((..(((((((.((((((((((.((.....)).))).)))).....))).)))))))..)).)))))...(((((((..(((....)))..))).)))) ( -46.80) >consensus _CCGCUAUCCUUGGACUCCAUUUCCCAAGGACGCGUGUAGCUGCCGUUCGAGUUGGAAUUGGAGUUCGAAUUCGCGUU_________GGCG_______________GC ..........((((((((((.(((....(((((.(........))))))......))).))))))))))....................................... (-16.38 = -16.05 + -0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:21 2006