Locus 953

Sequence ID 3L_DroMel_CAF1
Location 2,848,085 – 2,848,179
Length 94
Max. P 0.720534
window1464

overview

Window 4

Location 2,848,085 – 2,848,179
Length 94
Sequences 5
Columns 100
Reading direction forward
Mean pairwise identity 85.64
Mean single sequence MFE -20.04
Consensus MFE -14.73
Energy contribution -14.77
Covariance contribution 0.04
Combinations/Pair 1.14
Mean z-score -1.83
Structure conservation index 0.74
SVM decision value 0.40
SVM RNA-class probability 0.720534
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2848085 94 + 23771897
ACAGCAUGAGGCUUAAGUUCUGCUCUCAGAACUCUGUUCUGGCUUAGGAUUCAUAUUCCUAUUCCA------AUUCCUAUCCUGAUUCCUAUUCCGAUUC
.(((....(((....(((((((....)))))))......(((..(((((.......)))))..)))------...)))...)))................ ( -20.70)
>DroSec_CAF1 92925 88 + 1
ACAGCAUGAGGCUUAAGUUCUGCUCUCAGGACUCUGUUCUGGCUUAGGAUUCAUAUUCCU------------AUUCCUAUCCUGAUUCCUAUUCCGAUUC
.......(((((.........)).)))((((.((......((..(((((.......))))------------)..))......)).)))).......... ( -19.20)
>DroSim_CAF1 83598 94 + 1
ACAGCAUGAGGCUUAAGUUCUGCUCUCAGGACUCUGUUCUGGCUUAGGAUUCAUAUUCCUAUUCCU------AUUCCUAUCCUGAUUCCUAUUCCGAUUC
..((((.(((.(....)))))))).((((((.........((..(((((.......)))))..)).------.......))))))............... ( -19.33)
>DroEre_CAF1 96344 94 + 1
ACAGCAUGAGGCUUAAGUUCUGCUCCCAGGACUCUGUCCUGGCUUAGGAUUCAUAUUCCUAUUCCUAUCCUGAUU------CCGAUUCCGAUUCCAAUGC
...((((.(((.(..(((((((....)))))))..).)))((..(((((.......)))))..))..........------...............)))) ( -20.50)
>DroYak_CAF1 97774 100 + 1
ACAGCAUGAGGCUUAAGUUCUGCUCUCAGGAUUCUGCACUGGCUUAGGAUUCAUAUUCCUGUUCCUAUUCCUAUUCCCAUCCUGAUUCCGAUUCCAAUGC
...((((..(((.........))).(((((((........((..(((((..((......)).)))))..)).......)))))))...........)))) ( -20.46)
>consensus
ACAGCAUGAGGCUUAAGUUCUGCUCUCAGGACUCUGUUCUGGCUUAGGAUUCAUAUUCCUAUUCCU______AUUCCUAUCCUGAUUCCUAUUCCGAUUC
..(((.....)))..(((((((....)))))))......(((..(((((.(((.............................))).)))))..))).... (-14.73 = -14.77 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:13 2006