Locus 952

Sequence ID 3L_DroMel_CAF1
Location 2,843,502 – 2,843,593
Length 91
Max. P 0.874288
window1463

overview

Window 3

Location 2,843,502 – 2,843,593
Length 91
Sequences 5
Columns 92
Reading direction forward
Mean pairwise identity 86.87
Mean single sequence MFE -18.92
Consensus MFE -13.88
Energy contribution -14.32
Covariance contribution 0.44
Combinations/Pair 1.10
Mean z-score -2.20
Structure conservation index 0.73
SVM decision value 0.88
SVM RNA-class probability 0.874288
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2843502 91 + 23771897
ACCCCGGCACCCCUUAACCAUCACUUAACCCC-CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG
....(((((...(((((((.............-.)))))))...)))))....(((((...........................))))).. ( -21.07)
>DroSec_CAF1 88369 90 + 1
GCCCCGGCACCCCUUAACCCACACUUAGCC-C-CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG
(((((((((...(((((((...........-.-.)))))))...)))))........................((((......)))))))). ( -21.22)
>DroSim_CAF1 79040 91 + 1
GCCCCGGCACCCCCUAACCCACACUUAGCCCC-CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG
((....)).(((((.........(((((((..-.)))))))...(((.((((.........))))..)))...............))))).. ( -20.20)
>DroEre_CAF1 91681 75 + 1
ACCCC---------------GUACUUAACCCC-CGGUUAAGUCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGG-GGCG
.((((---------------(.((((((((..-.)))))))).)(((.((((.........))))..)))...............))-)).. ( -16.70)
>DroYak_CAF1 92815 92 + 1
ACCCCAGUGCCCCUUAACCCACACUUAACCCCACGCUUAAGUCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG
........((((((........((((((........))))))..(((.((((.........))))..)))...............)))))). ( -15.40)
>consensus
ACCCCGGCACCCCUUAACCCACACUUAACCCC_CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG
.((((((................(((((((....)))))))...(((.((((.........))))..))).............))))))... (-13.88 = -14.32 +   0.44) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006