Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,843,502 – 2,843,593 |
Length | 91 |
Max. P | 0.874288 |
Location | 2,843,502 – 2,843,593 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 92 |
Reading direction | forward |
Mean pairwise identity | 86.87 |
Mean single sequence MFE | -18.92 |
Consensus MFE | -13.88 |
Energy contribution | -14.32 |
Covariance contribution | 0.44 |
Combinations/Pair | 1.10 |
Mean z-score | -2.20 |
Structure conservation index | 0.73 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.874288 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2843502 91 + 23771897 ACCCCGGCACCCCUUAACCAUCACUUAACCCC-CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG ....(((((...(((((((.............-.)))))))...)))))....(((((...........................))))).. ( -21.07) >DroSec_CAF1 88369 90 + 1 GCCCCGGCACCCCUUAACCCACACUUAGCC-C-CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG (((((((((...(((((((...........-.-.)))))))...)))))........................((((......)))))))). ( -21.22) >DroSim_CAF1 79040 91 + 1 GCCCCGGCACCCCCUAACCCACACUUAGCCCC-CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG ((....)).(((((.........(((((((..-.)))))))...(((.((((.........))))..)))...............))))).. ( -20.20) >DroEre_CAF1 91681 75 + 1 ACCCC---------------GUACUUAACCCC-CGGUUAAGUCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGG-GGCG .((((---------------(.((((((((..-.)))))))).)(((.((((.........))))..)))...............))-)).. ( -16.70) >DroYak_CAF1 92815 92 + 1 ACCCCAGUGCCCCUUAACCCACACUUAACCCCACGCUUAAGUCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG ........((((((........((((((........))))))..(((.((((.........))))..)))...............)))))). ( -15.40) >consensus ACCCCGGCACCCCUUAACCCACACUUAACCCC_CGGUUAAGCCCUGCUGUUAACCCCCUCCUAAUCUGCACUCCUAAUAUCCUUUGGGGGCG .((((((................(((((((....)))))))...(((.((((.........))))..))).............))))))... (-13.88 = -14.32 + 0.44)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006