Locus 951

Sequence ID 3L_DroMel_CAF1
Location 2,840,876 – 2,840,972
Length 96
Max. P 0.806174
window1462

overview

Window 2

Location 2,840,876 – 2,840,972
Length 96
Sequences 6
Columns 98
Reading direction reverse
Mean pairwise identity 84.90
Mean single sequence MFE -23.25
Consensus MFE -18.81
Energy contribution -19.95
Covariance contribution 1.14
Combinations/Pair 1.17
Mean z-score -2.24
Structure conservation index 0.81
SVM decision value 0.63
SVM RNA-class probability 0.806174
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2840876 96 - 23771897
CCCCUCAUCAGCCGCCGCCCCCACCUUCUCACUUGGACGC-UGUCAACUCGAAAUGCAUUAUUUGCAUUUCUUGUU-CGGUCCACAGUGGUCGCGAAA
...............(((..((((.........(((((.(-....(((..((((((((.....))))))))..)))-.))))))..))))..)))... ( -24.70)
>DroSec_CAF1 85795 96 - 1
CCCCUCAUCAGCCGCCGCCCCCACCUUCUCACUUGGACGC-UGUCAACUCGAAAUGCAUUAUUUGCAUUUCUUGUU-CGGUCCACAGUGGUCGCAAAA
..........((.(((((.....((.........))..((-((..(((..((((((((.....))))))))..)))-)))).....))))).)).... ( -24.40)
>DroSim_CAF1 76493 96 - 1
CCCCUCAUCAGCCGCCGCCCCCACCUUCUCACUUCGACGC-UGUCAACUCGAAAUGCAUUAUUUGCAUUUCUUGUU-CGGUCCACAGUGGUCGCGAAA
..........((.(((((....(((..........(((..-.)))(((..((((((((.....))))))))..)))-.))).....))))).)).... ( -24.50)
>DroEre_CAF1 89000 96 - 1
CCCCUCAUCAGCCGCCGCCCCCACCUACUCACUUGGACGC-UGUCAACUCGAAAUGCAUUAUUUGCAUUUCUUGUU-UGGUCCACAGUGGUCGCGAAA
...............(((..((((.........(((((.(-....(((..((((((((.....))))))))..)))-.))))))..))))..)))... ( -25.40)
>DroYak_CAF1 90071 96 - 1
CCCCUCAUCAGCAGCCGCGCCCACCUUCUCACUCGGACUC-UGUCAACUCGAAAUGCAUUAUUUGCAUUUCUUGUU-UGGUCCACAGUGGUCGCGAAA
...............((((.((((..........(((((.-....(((..((((((((.....))))))))..)))-.)))))...)))).))))... ( -26.62)
>DroPer_CAF1 103992 84 - 1
CCUCUCUCUA-------UCCCUAUCU------CUGGACUCUUGUCAAUUCGA-GCGAAUUAUUUGCAUUUCUUGUUACCAAACACAGUCGAUGCGAAA
..........-------.........------...(((....)))(((((..-..))))).((((((((..((((........))))..)))))))). ( -13.90)
>consensus
CCCCUCAUCAGCCGCCGCCCCCACCUUCUCACUUGGACGC_UGUCAACUCGAAAUGCAUUAUUUGCAUUUCUUGUU_CGGUCCACAGUGGUCGCGAAA
..........((.(((((....(((..........(((....)))(((..((((((((.....))))))))..)))..))).....))))).)).... (-18.81 = -19.95 +   1.14)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:12 2006