| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,840,253 – 2,840,359 |
| Length | 106 |
| Max. P | 0.624741 |
| Location | 2,840,253 – 2,840,359 |
|---|---|
| Length | 106 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | reverse |
| Mean pairwise identity | 84.64 |
| Mean single sequence MFE | -23.13 |
| Consensus MFE | -16.79 |
| Energy contribution | -16.90 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.33 |
| Structure conservation index | 0.73 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.624741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2840253 106 - 23771897 ----AGGAAAAAAUUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGAAAUGGAAUUUCAAAUUAAUUCUUU-UCUGCUCG-------CUC-- ----............(((....(((((((((.(((((((....))))))).)))))))))............((((.((((((.......))))))))-)))))...-------...-- ( -21.20) >DroVir_CAF1 108943 104 - 1 ----GGAAAAAAAUUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGAAAUGGAAUUUCAAAUUAAUUCAUU-UCCC--GA-------CUU-- ----((.................(((((((((.(((((((....))))))).)))))))))............((((((((............))))))-))))--..-------...-- ( -20.30) >DroPse_CAF1 102213 118 - 1 GGGGAGAAAAAAAUUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGAAAUGGAAUUUCAAAUUAAUUCUUUUUCUGCUCCUUGGGUGCGU-- ((((((.................(((((((((.(((((((....))))))).)))))))))............((((.((((((.......)))))).))))..))))))........-- ( -27.20) >DroWil_CAF1 76918 112 - 1 CAUACAGAAAAAAAUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGAAAUGGAAUUUCAAAUUAAUUCCUU-UCUCUCUA-------UUUGC ................((((.(((((((((((.(((((((....))))))).)))))))))............((((.((((((.......))))))))-))..))..-------.)))) ( -24.00) >DroMoj_CAF1 99330 99 - 1 ---------AAAAUUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGGAAUGGAAUUUGAAAUUAAUUCAUU-UCUC--AA-------CUU-- ---------.((((((.((....(((((((((.(((((((....))))))).))))))))).......((....)).))))))))(((((......)))-))..--..-------...-- ( -20.80) >DroPer_CAF1 103199 116 - 1 --AGAGAAAAAAAUUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGAAAUGGAAUUUCAAAUUAAUUCUUUUUCUGCUCCUUGGGUGCGC-- --.............((((.((((((((((((.(((((((....))))))).)))))))..............((((.((((((.......)))))).))))....)))))..)))).-- ( -25.30) >consensus ____AGAAAAAAAUUCGCAAUGAGGGUUGAAAAUAAAUUGCUUUUAAUUUGAUUUCAACUCAAUUAAAUCUACGAAAUGGAAUUUCAAAUUAAUUCUUU_UCUCCUCA_______CUU__ .......................(((((((((.(((((((....))))))).)))))))))............((...((((((.......))))))...)).................. (-16.79 = -16.90 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:11 2006