Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,839,969 – 2,840,059 |
Length | 90 |
Max. P | 0.824872 |
Location | 2,839,969 – 2,840,059 |
---|---|
Length | 90 |
Sequences | 5 |
Columns | 100 |
Reading direction | reverse |
Mean pairwise identity | 86.59 |
Mean single sequence MFE | -26.70 |
Consensus MFE | -18.24 |
Energy contribution | -19.24 |
Covariance contribution | 1.00 |
Combinations/Pair | 1.09 |
Mean z-score | -2.38 |
Structure conservation index | 0.68 |
SVM decision value | 0.69 |
SVM RNA-class probability | 0.824872 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2839969 90 - 23771897 UUUUCG--------GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAAUAAGC-- ......--------(((....)))..((((...((..(((((((((((((....)))))))))..))))..))..))))...................-- ( -25.60) >DroSec_CAF1 84905 90 - 1 UUUUCG--------GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAACAAGC-- ......--------(((....)))...(((...((..(((((((((((((....)))))))))..))))..))...(((.(((....))).))).)))-- ( -25.80) >DroSim_CAF1 75594 90 - 1 UUUUCG--------GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAACAAGC-- ......--------(((....)))...(((...((..(((((((((((((....)))))))))..))))..))...(((.(((....))).))).)))-- ( -25.80) >DroEre_CAF1 88088 89 - 1 UAUUCGC---------CAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAGCG--AGGUGGUCCGCUUGAUUGGGAAAGUUUUCAAUUUUAAUAACAAGCGC ..(((((---------(....)))...(((((((.........))))))))--))......((((((.(((..(((((.....)))))..))))))))). ( -28.20) >DroYak_CAF1 89098 98 - 1 UAUUCGCCCAAAUGGCCAAAUGGCACAGCUGUCCUUGAUUAUUGGCCAUCG--AGGUGCUCAGCUAAAUUGGGAUAGUUUUUAAUUUUAAUAGCACGGAC ..(((((((((...(((....)))..(((((.(((((((........))))--)))....)))))...)))))...(((.(((....))).))).)))). ( -28.10) >consensus UUUUCG________GCCAAAUGGCACAGCUGUCCUUGAUUAUUGGGCAUCGAGAGGUGCUCAGCUUAAUUGAGAAAGUUUUUAAUUUUAAUAACAAGC__ ..............(((....)))..((((...((..(((((((((((((....)))))))))..))))..))..))))..................... (-18.24 = -19.24 + 1.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:08 2006