Locus 947

Sequence ID 3L_DroMel_CAF1
Location 2,836,898 – 2,836,989
Length 91
Max. P 0.509536
window1457

overview

Window 7

Location 2,836,898 – 2,836,989
Length 91
Sequences 6
Columns 100
Reading direction reverse
Mean pairwise identity 84.00
Mean single sequence MFE -21.33
Consensus MFE -16.52
Energy contribution -16.94
Covariance contribution 0.42
Combinations/Pair 1.10
Mean z-score -1.53
Structure conservation index 0.77
SVM decision value -0.05
SVM RNA-class probability 0.509536
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2836898 91 - 23771897
CUCCAGCAGCAAUCCCCAGUCCCAGUGACAUC--GUCUCCAU-------CUUCCAUUUUCAAUCUUGUGGCAGUCUUUUCAUCAUUGGGGGGCUGCAACU
.....(((((...(((((((....((((....--(.((((((-------.................)))).)).)...)))).))))))).))))).... ( -24.23)
>DroSec_CAF1 81942 91 - 1
CUCCAGCAGCAAUCCUCAGUCCCAGUGACAUC--GUCUCCAU-------CUUCCAUUUCCAAUCUUGUGGCAGUCUUUUCAUCAUUGGGGGGCUGCAACU
.....(((((.........(((((((((....--(.((((((-------.................)))).)).)......))))))))).))))).... ( -21.43)
>DroSim_CAF1 72523 91 - 1
CUCCAGCAGCAAUCCUCAGUCCCAGUGACAUC--GUCUCCAU-------CUUCCAUUCCCAAUCUUGUGGCAGUCUUUUCAUCAUUGGGGGGCUGCAACU
.....(((((.........(((((((((....--(.((((((-------.................)))).)).)......))))))))).))))).... ( -21.43)
>DroEre_CAF1 85063 98 - 1
CUCCA-CAGCAAUCCCCAGUCCCAGUGACAUCCAGUCUCCAUCUUCCAUCUUCCAUUUCCAAUCUUGUGGCAGUCUUUUCAUCAUUGGGGGGCUGCAAC-
.....-..(((..((((.....((((((.....((.((((((........................)))).)).)).....))))))))))..)))...- ( -21.66)
>DroYak_CAF1 85901 87 - 1
CUCC---AGUCAUCCCCAGUCCCAGUGACAUC--GUCUCCAU-------CUUCCAUUUCCAAUCUUGUGGCAGUCUUUUCAUCAUUGGGGGGCUGCAAC-
...(---((((..(((((((....((((....--(.((((((-------.................)))).)).)...)))).))))))))))))....- ( -19.03)
>DroAna_CAF1 70317 84 - 1
UUCAAGUCGUAAUCCCAGGCCCCAGUGACAUC--GUCUCCAU-------CUUGUAGUUUCCAUCUCGUGGCAGUUCCAACGUCAUUGGGGGGC-------
...................((((((((((...--..((((((-------..((.......))....)))).)).......))))))))))...------- ( -20.20)
>consensus
CUCCAGCAGCAAUCCCCAGUCCCAGUGACAUC__GUCUCCAU_______CUUCCAUUUCCAAUCUUGUGGCAGUCUUUUCAUCAUUGGGGGGCUGCAAC_
........(((.(((.....((((((((......(.((((((........................)))).)).)......))))))))))).))).... (-16.52 = -16.94 +   0.42)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:07 2006