Locus 944

Sequence ID 3L_DroMel_CAF1
Location 2,833,020 – 2,833,113
Length 93
Max. P 0.803867
window1453

overview

Window 3

Location 2,833,020 – 2,833,113
Length 93
Sequences 4
Columns 94
Reading direction reverse
Mean pairwise identity 91.80
Mean single sequence MFE -18.00
Consensus MFE -14.81
Energy contribution -14.88
Covariance contribution 0.06
Combinations/Pair 1.06
Mean z-score -1.86
Structure conservation index 0.82
SVM decision value 0.63
SVM RNA-class probability 0.803867
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2833020 93 - 23771897
CUUCAUUUUUCCCUUGCUCUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAUGAAAUCCUCCUGCCACGUCC-ACCUUUAUUUCCA
.......((((....((...(((...(((.(((.......))).)))..)))...))...))))................-............. ( -13.30)
>DroSec_CAF1 78060 92 - 1
CUUCAUU-UUCCCUUGCUGUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGGCACGCCC-ACCUUUAUUUCCA
.......-.......((...(((...(((.(((.......))).)))..)))..((((((((.....)))))))).))..-............. ( -24.60)
>DroSim_CAF1 68643 93 - 1
CUUCAUUUUUCCCUUGCUGUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGCCACGCCC-ACCUUUAUUUCCA
...............((...(((...(((.(((.......))).)))..)))...))(((((.....)))))........-............. ( -17.80)
>DroYak_CAF1 81213 89 - 1
CUUCAUUUUUCUCU-----UUGCUAUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGUCGCUCCCAACCUUUAUUUCCA
..............-----.(((...(((.(((.......))).)))..)))...(((((((.....)))))..)).................. ( -16.30)
>consensus
CUUCAUUUUUCCCUUGCUGUUGCUGUUGCCACCGAAUUCAGGUCGCGUUGCAUUUGCCAGGAAAUCCUCCUGCCACGCCC_ACCUUUAUUUCCA
....................(((...(((.(((.......))).)))..)))..((.(((((.....))))).))................... (-14.81 = -14.88 +   0.06) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:55:03 2006