Locus 941

Sequence ID 3L_DroMel_CAF1
Location 2,820,020 – 2,820,116
Length 96
Max. P 0.759544
window1446

overview

Window 6

Location 2,820,020 – 2,820,116
Length 96
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 85.87
Mean single sequence MFE -11.65
Consensus MFE -11.30
Energy contribution -11.30
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.29
Structure conservation index 0.97
SVM decision value 0.50
SVM RNA-class probability 0.759544
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2820020 96 + 23771897
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCUCUUCAACACACACUACAUACA--UAU---ACAUA--
........((((((.((((((...(((((((......)))))))...))))))..))))))...........................--...---.....-- ( -11.30)
>DroPse_CAF1 77606 91 + 1
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCCCUUCCACCCACA---CA---------CACACACAAG
........((((((.((((((...(((((((......)))))))...))))))..))))))..................---..---------.......... ( -11.30)
>DroSec_CAF1 64953 95 + 1
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCUCUUCAACACACA---CAUACA--UAU---ACAUAUA
........((((((.((((((...(((((((......)))))))...))))))..))))))..................---......--...---....... ( -11.30)
>DroSim_CAF1 56425 95 + 1
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCUCUUCAACACACA---CAUACA--UAU---ACAUAUA
........((((((.((((((...(((((((......)))))))...))))))..))))))..................---......--...---....... ( -11.30)
>DroWil_CAF1 58695 85 + 1
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCUUUCCAGCAUACA---CACACA---------------
........((((((.((((((...(((((((......)))))))...))))))..))))))..................---......--------------- ( -11.30)
>DroYak_CAF1 67533 89 + 1
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCUCUUCAACACACA---CACA--CCCGC---------A
........((((((((.((((((.....)))))).))))))((((..((..(((.....)))...))..))))......---....--...))---------. ( -13.40)
>consensus
UUCCCUGAGCAAAAUUAAAUUUUCCAAGGAAAUUGAAUUUUUUGAUUAGUUUGCUUUUUGCAUCUCUCUUCAACACACA___CAUACA__UAU___ACAUA_A
........((((((.((((((...(((((((......)))))))...))))))..)))))).......................................... (-11.30 = -11.30 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:56 2006