Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 344,050 – 344,170 |
Length | 120 |
Max. P | 0.966139 |
Location | 344,050 – 344,170 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.89 |
Mean single sequence MFE | -54.30 |
Consensus MFE | -54.52 |
Energy contribution | -54.30 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.03 |
Mean z-score | -2.35 |
Structure conservation index | 1.00 |
SVM decision value | 1.59 |
SVM RNA-class probability | 0.966139 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 344050 120 + 23771897 UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGCCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUCAACUUG ..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... ( -56.10) >DroSec_CAF1 16632 120 + 1 UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGUCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUUAACUUG ..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... ( -53.40) >DroSim_CAF1 16209 120 + 1 UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGUCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUUAACUUG ..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... ( -53.40) >consensus UUGGCCAAGCGGGCGCGUGCCUCGGACAGCAUUUCCAGCUCGUCCUCGUCCAUGUCCUUGGGAUCGGGUCGCGCCGGCUUGGUCUCUGGAUUGGGGUCAAUCUCUCCGGGCUUUAACUUG ..((((((((.((((((.((((.(((((((.......))).))))...((((......))))...)))))))))).))))))))((((((..((((....)))))))))).......... (-54.52 = -54.30 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:11 2006