Locus 939

Sequence ID 3L_DroMel_CAF1
Location 2,817,014 – 2,817,119
Length 105
Max. P 0.990067
window1444

overview

Window 4

Location 2,817,014 – 2,817,119
Length 105
Sequences 5
Columns 109
Reading direction forward
Mean pairwise identity 89.09
Mean single sequence MFE -18.28
Consensus MFE -14.48
Energy contribution -14.48
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.67
Structure conservation index 0.79
SVM decision value 2.19
SVM RNA-class probability 0.990067
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2817014 105 + 23771897
CAUUUCCAUUUUCACAGCACAU--CGUUUUCCACACUUUUCCACAUUUCCCUAGUUGAAACUUAGUG--CCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC
................((((..--.(((...(((...((((.((.........)).))))....)))--..)))..)))).((.((((((......)))))).)).... ( -15.60)
>DroSec_CAF1 62090 107 + 1
CAUUUCCAUUUUCGCCGCACAUCUCGUUUUCCACACU--UCCACAUUUCCCUAGUUGAAACUUAGUGCGCCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC
.............(((((((.....(((((....(((--.............))).)))))...(.((....)).)))).))))((((((......))))))....... ( -19.42)
>DroSim_CAF1 53370 105 + 1
CAUUUCCAUUUUCUCCGCACAUCUCGUUUUCCACACU--UCCACAUUUCCCUAGUUGAAACUUAGUG--CCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC
................((((.....((.....))...--.............(((((..((...)).--.))))).)))).((.((((((......)))))).)).... ( -15.50)
>DroEre_CAF1 64693 97 + 1
CAUUUCCAUUUUCCCAGCACAU--CGUUUUCCACA--------CAUUUCCCUAGUUGAAACUUAGUU--CCAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUC
................((((..--.((.....)).--------.........(((((.(((...)))--.))))).)))).(((((((((......))))))))).... ( -20.40)
>DroYak_CAF1 64144 92 + 1
-----CCAUUUUCGCAGCACAU--CGUUUUCCACA--------CAUUUCCCAAGUUGAAACUUAGUU--CCAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUC
-----...........((((..--.((.....)).--------.........(((((.(((...)))--.))))).)))).(((((((((......))))))))).... ( -20.50)
>consensus
CAUUUCCAUUUUCGCAGCACAU__CGUUUUCCACACU__UCCACAUUUCCCUAGUUGAAACUUAGUG__CCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC
................((((.....((.....))..................(((((.............))))).)))).((.((((((......)))))).)).... (-14.48 = -14.48 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:54 2006