Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,817,014 – 2,817,119 |
Length | 105 |
Max. P | 0.990067 |
Location | 2,817,014 – 2,817,119 |
---|---|
Length | 105 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 89.09 |
Mean single sequence MFE | -18.28 |
Consensus MFE | -14.48 |
Energy contribution | -14.48 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.67 |
Structure conservation index | 0.79 |
SVM decision value | 2.19 |
SVM RNA-class probability | 0.990067 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2817014 105 + 23771897 CAUUUCCAUUUUCACAGCACAU--CGUUUUCCACACUUUUCCACAUUUCCCUAGUUGAAACUUAGUG--CCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC ................((((..--.(((...(((...((((.((.........)).))))....)))--..)))..)))).((.((((((......)))))).)).... ( -15.60) >DroSec_CAF1 62090 107 + 1 CAUUUCCAUUUUCGCCGCACAUCUCGUUUUCCACACU--UCCACAUUUCCCUAGUUGAAACUUAGUGCGCCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC .............(((((((.....(((((....(((--.............))).)))))...(.((....)).)))).))))((((((......))))))....... ( -19.42) >DroSim_CAF1 53370 105 + 1 CAUUUCCAUUUUCUCCGCACAUCUCGUUUUCCACACU--UCCACAUUUCCCUAGUUGAAACUUAGUG--CCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC ................((((.....((.....))...--.............(((((..((...)).--.))))).)))).((.((((((......)))))).)).... ( -15.50) >DroEre_CAF1 64693 97 + 1 CAUUUCCAUUUUCCCAGCACAU--CGUUUUCCACA--------CAUUUCCCUAGUUGAAACUUAGUU--CCAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUC ................((((..--.((.....)).--------.........(((((.(((...)))--.))))).)))).(((((((((......))))))))).... ( -20.40) >DroYak_CAF1 64144 92 + 1 -----CCAUUUUCGCAGCACAU--CGUUUUCCACA--------CAUUUCCCAAGUUGAAACUUAGUU--CCAGCUCGUGCCGGAAAGUGACCAAAUUCACUUUCCCCUC -----...........((((..--.((.....)).--------.........(((((.(((...)))--.))))).)))).(((((((((......))))))))).... ( -20.50) >consensus CAUUUCCAUUUUCGCAGCACAU__CGUUUUCCACACU__UCCACAUUUCCCUAGUUGAAACUUAGUG__CCAGCUCGUGCCGGCAAGUGACCAAAUUCACUUUCCCCUC ................((((.....((.....))..................(((((.............))))).)))).((.((((((......)))))).)).... (-14.48 = -14.48 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:54 2006