Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,811,185 – 2,811,279 |
Length | 94 |
Max. P | 0.790963 |
Location | 2,811,185 – 2,811,279 |
---|---|
Length | 94 |
Sequences | 5 |
Columns | 101 |
Reading direction | reverse |
Mean pairwise identity | 89.41 |
Mean single sequence MFE | -20.88 |
Consensus MFE | -15.76 |
Energy contribution | -15.68 |
Covariance contribution | -0.08 |
Combinations/Pair | 1.11 |
Mean z-score | -1.91 |
Structure conservation index | 0.75 |
SVM decision value | 0.59 |
SVM RNA-class probability | 0.790963 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2811185 94 - 23771897 -AACUGGAGAAAUUCAGGCCAGAACCAGAGGCAGAGGCAG--AGCAAUUGUUGCAAUAGCAAGAUGAAAAAAAGGGUGGCA--AAA--AAAUUGCUCAUCA -..(((((....)))))(((....((...))....))).(--(((((((.((((....((....(....).....)).)))--)..--.)))))))).... ( -24.80) >DroSec_CAF1 56276 90 - 1 -AACUGGGGAAAUUCAGGCCAGAACCAGAG------GCAG--AGCAAUUGUUGCAAUGGCAAGAUGAAAAAAGGGGUGGCA--AAAAAAAAUUGCUCAUCA -..(((((....)))))(((.........)------)).(--(((((((.((((....((....(......)...)).)))--).....)))))))).... ( -19.20) >DroSim_CAF1 47568 89 - 1 -AACUGGGGAAAUUCAGGUCAGAACCAGAG------GCAG--AGCAAUUGUUGCAAUGGCAAGAUGAAAAAAGGGGUGGCA--AAAA-AAACUGCUCAUCA -..(((((....))))).(((...(((...------((((--........))))..))).....))).......(((((((--....-....))).)))). ( -17.40) >DroEre_CAF1 58765 97 - 1 AAACUGGGGAAAUUCAGGCCAGAACCAGAGGCAGAGGCAG--AGCAAUUGUUGCAAUGGCAAGAUGGAAAAAGGGGUGGCA--AAAAAAAAUUGCUCAUCA ...((((.(.....)...))))..(((...((....((((--........))))....))....))).......(((((((--(.......)))).)))). ( -20.90) >DroYak_CAF1 58105 100 - 1 -AACUGGUGAAAUUCAGGCCAGUACCAGAGGCAGAAGCAGCUAGCAAUUGUUGCAACGGCAAGAUGAAAAAAGGGGUGGCAGAAAAAAAAAUUGCUCAUCA -.((((((.........))))))..((...((.(..(((((........)))))..).))....))........((((((((.........)))).)))). ( -22.10) >consensus _AACUGGGGAAAUUCAGGCCAGAACCAGAGGCAGA_GCAG__AGCAAUUGUUGCAAUGGCAAGAUGAAAAAAGGGGUGGCA__AAAAAAAAUUGCUCAUCA ...(((((....)))))((((...((..........((.....))...(.((((....)))).).........)).))))..................... (-15.76 = -15.68 + -0.08)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:50 2006