| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,807,406 – 2,807,498 |
| Length | 92 |
| Max. P | 0.922818 |
| Location | 2,807,406 – 2,807,498 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 85.13 |
| Mean single sequence MFE | -24.90 |
| Consensus MFE | -22.71 |
| Energy contribution | -22.93 |
| Covariance contribution | 0.22 |
| Combinations/Pair | 1.09 |
| Mean z-score | -1.91 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.15 |
| SVM RNA-class probability | 0.922818 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2807406 92 - 23771897 AAAACAAAA-AAAAAACGCAGAGCCUUGCUGCCUGUACUUUUUGCUUUUGGCAUUUUGCGGCGAUAUUCGCGAAAUGCGCGCAGCACUCACAC-- .........-..........(((...((((((..(((.....))).....(((((((((((......)))))))))))..)))))))))....-- ( -26.50) >DroSec_CAF1 52406 88 - 1 AAA----AA-AAAAAACGGGGAGCCUUGCUGCCUGUACUUUUUGCUUUUGGCAUUUUGCGGCGAUAUUCGCGAAAUGCGCGCAGCACUCACAC-- ...----((-(((..(((((.(((...))).)))))..)))))(((..(((((((((((((......))))))))))).)).)))........-- ( -28.90) >DroEre_CAF1 54796 92 - 1 AAAACAAAA---AAAACGCGGAGCCUUGCUGCCUGUACUUUUUGCUUUUGGCAUUUUGCGGCGAUAUUCGCGAAAUGCGCGCAGCACUCACACAC .........---.....(.((((...((((((..(((.....))).....(((((((((((......)))))))))))..))))))))).).).. ( -26.50) >DroWil_CAF1 44830 84 - 1 AACUC---------AAUGCCGCUUCUUGUUGCCUGUACUUUUUGCUUUUGGCAUUUUGUGGCGAUAUUCGCGAUAUGCGCGCAGCAUACACAC-- .....---------.((((.((....(((((((...((....(((.....)))....)))))))))...(((.....))))).))))......-- ( -21.20) >DroYak_CAF1 54147 93 - 1 AAAACAAAAAAAAAAACGCGGAGCCUUGCUGCCUGUACUUUUUGCUUUUGGCAUUUUGUGGCGAUAUUCGCGAAAUGCGCGCAGCACUCACAC-- ....................(((...((((((..(((.....))).....(((((((((((......)))))))))))..)))))))))....-- ( -24.40) >DroAna_CAF1 41450 83 - 1 CAA------------ACCAAGAGCCUUGUUGCCUGUACUUUUUGCUUUUGGCAUUUUGCGGCGAUAUUCGCGAAAUACGCGCAGCACUCACACCA ...------------.....(((...((((((.((((.....(((.....)))((((((((......)))))))))))).)))))))))...... ( -21.90) >consensus AAAAC__AA___AAAACGCGGAGCCUUGCUGCCUGUACUUUUUGCUUUUGGCAUUUUGCGGCGAUAUUCGCGAAAUGCGCGCAGCACUCACAC__ ....................(((...((((((..(((.....))).....(((((((((((......)))))))))))..)))))))))...... (-22.71 = -22.93 + 0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:49 2006