Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,805,919 – 2,806,014 |
Length | 95 |
Max. P | 0.873216 |
Location | 2,805,919 – 2,806,014 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 68.06 |
Mean single sequence MFE | -23.47 |
Consensus MFE | -11.24 |
Energy contribution | -10.88 |
Covariance contribution | -0.36 |
Combinations/Pair | 1.17 |
Mean z-score | -1.76 |
Structure conservation index | 0.48 |
SVM decision value | 0.88 |
SVM RNA-class probability | 0.873216 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2805919 95 - 23771897 ---GGAGGG------AAGUGGAGUUGUGGGUG-----GCUAUAUAUGUACAUAGCUAUAGCUUAAUGGGUGGCAUGAAAUAUUGCCGGCUAAAGUUUUUUCCAAAAUGA ---((((((------((.(.(((((((((.((-----..(((....)))..)).)))))))))..(((.(((((........))))).))).).))))))))....... ( -27.90) >DroVir_CAF1 67631 73 - 1 ---GGCUGG-------GGUGGGGCUAAGAGAG-----AC------------------UCGCUUAAUGGGUGGCAUGAAAUAUUGCCGGCUGAAGUUUUG---CAAAUGA ---.((..(-------((((((.((.....))-----.)------------------))))))...((.(((((........))))).))........)---)...... ( -18.30) >DroPse_CAF1 60544 93 - 1 GAGCGAAAG------AAGUGGAGUUGUGGGUGUACCGGCCACCA--------GGGGCUGGCUUAAUGGGUGGCAUGAAAUAUUGCCGGCUAAAGUUUUUUUCCAAAU-- ..(.(((((------((.(..(((((..(((((..((((((((.--------.(((....)))....)))))).))..)))))..)))))..).))))))).)....-- ( -26.50) >DroSim_CAF1 40910 95 - 1 ---GGAGGG------AAGUGGAGUUGUGGGUG-----GCUAUAUGUGUACAUAGCUAUAGCUUAAUGGGUGGCAUGAAAUAUUGCCGGCUAAAGUUUUUUCCAAAAUGA ---((((((------((.(.(((((((((.((-----..(((....)))..)).)))))))))..(((.(((((........))))).))).).))))))))....... ( -27.90) >DroMoj_CAF1 52820 72 - 1 ---GGCAGG-------GGCGGGGCUGAC-GGG-----AC------------------UCGCUUAAUGGGUGGCAUGAAAUAUUGCCGGCUGAAGUUUUG---CAAAUGA ---.(((((-------((((((.((...-.))-----.)------------------))))))...((.(((((........))))).))......)))---)...... ( -21.90) >DroAna_CAF1 40119 82 - 1 ---CGAGGGGCAAGCGAGGGAAGUUGUGGGAG-----GCUA------------------ACUUAAUGGGUGGCAUGAAAUAUUGCCGGCUAAAGUUUUUU-CAAAAUGA ---...(..(.((((.(((..((((......)-----))).------------------.)))..(((.(((((........))))).)))..)))))..-)....... ( -18.30) >consensus ___GGAGGG______AAGUGGAGUUGUGGGUG_____GCUA________________UAGCUUAAUGGGUGGCAUGAAAUAUUGCCGGCUAAAGUUUUUU_CAAAAUGA ...........................................................((((..(((.(((((........))))).))))))).............. (-11.24 = -10.88 + -0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:48 2006