Locus 934

Sequence ID 3L_DroMel_CAF1
Location 2,804,844 – 2,804,935
Length 91
Max. P 0.660377
window1437

overview

Window 7

Location 2,804,844 – 2,804,935
Length 91
Sequences 6
Columns 102
Reading direction forward
Mean pairwise identity 82.43
Mean single sequence MFE -22.77
Consensus MFE -13.51
Energy contribution -13.70
Covariance contribution 0.19
Combinations/Pair 1.06
Mean z-score -2.41
Structure conservation index 0.59
SVM decision value 0.27
SVM RNA-class probability 0.660377
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2804844 91 + 23771897
UGCGACUUGGUGUGC-----GUGUAUCUGUGUGCG---GUUGCUACGGCAAAAAGGUAGUAAA-AAAUAACUGCGGUAAACCGAAAAAGGCACAAA--AAAA
......((..(((((-----.(...((.((.(((.---.((((....))))....(((((...-.....))))).))).)).))...).)))))..--)).. ( -22.40)
>DroPse_CAF1 59185 95 + 1
UGCACGUGUGUGUGCCCGUAGUGUAUCCGU--GAG---GUUGCCACGGCAAAAACGUAGUAAAAAAAUAACUGCGGUAAACCGAAAAAGGCACAAA--AAUA
.....((...((((((....(.(((.((..--..)---).)))).(((......((((((.........)))))).....))).....))))))..--.)). ( -26.60)
>DroSim_CAF1 39854 93 + 1
UGCAACUUGGUGUGC-----GUGUAUCUGUGUGCG---GUUGCUACGGCAAAAAGGUAGUAAA-AAAUAACUGCGGUAAACCGAAAAAGGCACAAAAAAAAA
......((..(((((-----.(...((.((.(((.---.((((....))))....(((((...-.....))))).))).)).))...).)))))..)).... ( -22.40)
>DroMoj_CAF1 51786 82 + 1
-----CU--GUGUGC-----GUGCAUGUGUGAG-A---GUUGCUACGA-AAAAAGGUAGUAAA-AAAUAACUGCGGUAAACCGAAAAAGGCACAAA--AAAU
-----..--.(((((-----..(((.((.....-.---.(((((((..-......))))))).-.....)))))((....)).......)))))..--.... ( -20.22)
>DroAna_CAF1 39072 91 + 1
UGCAAGU--GUAUGG-----GUGUAUCUGUGUGUGCAUGUUGCUACGGAAAAAAGGUAGUAAA-AAAUAACUGCGGUAAACCGAAAAAGGCACAAA--AAA-
.....((--((.(.(-----((....(((((.((.....(((((((.........))))))).-.....)))))))...))).).....))))...--...- ( -18.40)
>DroPer_CAF1 59610 95 + 1
UGCACGUGUGUGUGCCCGUAGUGUAUCCGU--GAG---GUUGCCACGGCAAAAACGUAGUAAAAAAAUAACUGCGGUAAACCGAAAAAGGCACAAA--AAUA
.....((...((((((....(.(((.((..--..)---).)))).(((......((((((.........)))))).....))).....))))))..--.)). ( -26.60)
>consensus
UGCAACU__GUGUGC_____GUGUAUCUGUGUGAG___GUUGCUACGGCAAAAAGGUAGUAAA_AAAUAACUGCGGUAAACCGAAAAAGGCACAAA__AAAA
....................((((...............(((((((.........)))))))........((.(((....)))....))))))......... (-13.51 = -13.70 +   0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:47 2006