| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,798,231 – 2,798,331 |
| Length | 100 |
| Max. P | 0.732905 |
| Location | 2,798,231 – 2,798,331 |
|---|---|
| Length | 100 |
| Sequences | 5 |
| Columns | 105 |
| Reading direction | reverse |
| Mean pairwise identity | 78.65 |
| Mean single sequence MFE | -16.45 |
| Consensus MFE | -9.12 |
| Energy contribution | -9.40 |
| Covariance contribution | 0.28 |
| Combinations/Pair | 1.26 |
| Mean z-score | -1.93 |
| Structure conservation index | 0.55 |
| SVM decision value | 0.43 |
| SVM RNA-class probability | 0.732905 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2798231 100 - 23771897 ACUGCUUCCCCUCAAAAAAA-----AAAGCAUGUACUAUACGUAUAUAUUCGUAUGUAUAUAUGUAUGUACAGCAAGGUUCUGGUAGAUAAACCCACUCACACUC .(((((...(((........-----...((.(((((.((((((((((((......))))))))))))))))))).)))....))))).................. ( -23.70) >DroSec_CAF1 43427 93 - 1 ACUGCUUCCCCUCAAAAAAA--------ACAUGUACUAUACGUAUAUAUUCGUAUGUAUAUAU----GUACAGCAAGGUUCUGGUAGAUAAACCCACUCACACUC .(((((...(((........--------...((((((((((((((......)))))))))...----)))))...)))....))))).................. ( -16.24) >DroSim_CAF1 33322 93 - 1 ACUGCUUCCCCUCGAAAAAA--------ACAUGUACUAUACGUAUAUAUUCGUAUGUAUAUAU----GUACAGCAAGGUUCUGGUAGAUAAACCCACUCACACUC .(((((...(((.(......--------...((((((((((((((......)))))))))...----))))).).)))....))))).................. ( -17.30) >DroEre_CAF1 45411 105 - 1 ACUGCUUCCCCUCAAAAAAAAAAAAAAAAGAUGUACUAUACAUAUAUAUACUUAUACAUACUUGUAUAUGUAGGAAGGUUCUGGUAGAUAAACCCACUCACACAC .(((((..((.((.................(((((...))))).....(((.((((((....)))))).))).)).))....))))).................. ( -15.60) >DroYak_CAF1 44787 82 - 1 ACUGUUUGCCCUCAAAAA---------AAUAUGUACAAUAUGUAUAUAAA--------------UAUGUAUAGCUAGGUUCUAGUAGAUAAACCCACUCACACGC ...(((((..........---------..(((((((.....)))))))..--------------........(((((...)))))...)))))............ ( -9.40) >consensus ACUGCUUCCCCUCAAAAAAA_______AACAUGUACUAUACGUAUAUAUUCGUAUGUAUAUAU_UAUGUACAGCAAGGUUCUGGUAGAUAAACCCACUCACACUC .(((((...(((..................((((((.....)))))).......(((((........)))))...)))....))))).................. ( -9.12 = -9.40 + 0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:45 2006