Locus 93

Sequence ID 3L_DroMel_CAF1
Location 343,610 – 343,730
Length 120
Max. P 0.521453
window131

overview

Window 1

Location 343,610 – 343,730
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.61
Mean single sequence MFE -43.97
Consensus MFE -42.90
Energy contribution -42.90
Covariance contribution 0.00
Combinations/Pair 1.05
Mean z-score -1.41
Structure conservation index 0.98
SVM decision value -0.02
SVM RNA-class probability 0.521453
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 343610 120 + 23771897
UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUCCGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCUUUGCGCU
...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)))).)))).)))))..)).)))))... ( -43.90)
>DroSec_CAF1 16192 120 + 1
UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUUCGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCCUUGCGCU
...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)))).)))).)))))..)).)))))... ( -43.40)
>DroSim_CAF1 15769 120 + 1
UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUACGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCCUUGCGCU
...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)).)))))).)))))..)).)))))... ( -44.60)
>consensus
UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUACGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCCUUGCGCU
...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)))).)))).)))))..)).)))))... (-42.90 = -42.90 +   0.00) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:10 2006