Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 343,610 – 343,730 |
Length | 120 |
Max. P | 0.521453 |
Location | 343,610 – 343,730 |
---|---|
Length | 120 |
Sequences | 3 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 98.61 |
Mean single sequence MFE | -43.97 |
Consensus MFE | -42.90 |
Energy contribution | -42.90 |
Covariance contribution | 0.00 |
Combinations/Pair | 1.05 |
Mean z-score | -1.41 |
Structure conservation index | 0.98 |
SVM decision value | -0.02 |
SVM RNA-class probability | 0.521453 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 343610 120 + 23771897 UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUCCGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCUUUGCGCU ...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)))).)))).)))))..)).)))))... ( -43.90) >DroSec_CAF1 16192 120 + 1 UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUUCGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCCUUGCGCU ...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)))).)))).)))))..)).)))))... ( -43.40) >DroSim_CAF1 15769 120 + 1 UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUACGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCCUUGCGCU ...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)).)))))).)))))..)).)))))... ( -44.60) >consensus UGACUACCUGCUGUAGUUCCAUGUCGGAAAUCUGCGGCGUAGGCAGGACUAGUUUGGAGCGCUUACGCUCGGGCUCCAUGUUUUGCAGCAUUGCGGUGGGCACUUCAUUCUCCUUGCGCU ...((((..(((((((((((.....))))..)))))))))))(((((...((..(((((.((((((((....(((.((.....)).)))...)))).)))).)))))..)).)))))... (-42.90 = -42.90 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:10 2006