Locus 929

Sequence ID 3L_DroMel_CAF1
Location 2,792,869 – 2,792,974
Length 105
Max. P 0.851790
window1429

overview

Window 9

Location 2,792,869 – 2,792,974
Length 105
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 92.08
Mean single sequence MFE -31.20
Consensus MFE -24.85
Energy contribution -25.41
Covariance contribution 0.56
Combinations/Pair 1.08
Mean z-score -1.79
Structure conservation index 0.80
SVM decision value 0.79
SVM RNA-class probability 0.851790
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2792869 105 + 23771897
AAAUGAAUUCU---------AUCCCAGGAAUCCUUGGCUAAAAGUGCAGUUAAACGAUGCGGGAAUAAUUGAUUCGCUCAUCGGCGCGGCGAAUGUGGCCAUAAAAGUGGCCAA
......((((.---------...(((((....)))))......((((.......(((((.(.((((.....)))).).)))))))))...)))).(((((((....))))))). ( -31.21)
>DroSec_CAF1 38100 114 + 1
AAAUGAAUAGUGGAACCCUAAUCCCAAGAAUCCUUGGCUAAAAGUGCAGUUAAACGAUGCGGGAAUAAUUGAUUUGCUCAUCGGCGCGGCGAAUGUGGCCAUAAAAGUGGCCAA
....((.(((.(....)))).))(((((....))))).......(((.((....(((((.(.((((.....)))).).)))))..)).)))....(((((((....))))))). ( -29.80)
>DroSim_CAF1 27933 114 + 1
AAAUGAAUAGUGGAACCCUAAUCCCAAGAAUCCUUGGCUAAAAGUGCAGUUAAACGAUGCGGGAAUAAUUGAUUCGCUCAUCGGCGCGGGGAAUGUGGCCAUAAAAGUGGCCAA
...............((((....(((((....)))))......((((.......(((((.(.((((.....)))).).)))))))))))))....(((((((....))))))). ( -35.91)
>DroEre_CAF1 39982 113 + 1
AAAUGAGGAAUGGAACCCU-AUCGCAAGAAUCCUUGGCUAAAAGUGCAGUUAAACGAUGCGGUAAUAAUUGAUUCGCUCAUCGGCGCAGCGAAUGUGGCCAUAAAAGUGGCCAA
...((((((((.(((((.(-((((((((....))))((.......)).......))))).))).....)).)))).))))(((......)))...(((((((....))))))). ( -31.30)
>DroYak_CAF1 39292 113 + 1
AAAUGAAUAAUGGAACCCU-AUCACAAGAAUCCUUGGCUAAAAGUGCAGUUAAACGAUGCGGCAAUAAUUGAUUCGCUCAUCGGCGCAGCGAAUGUGGCCAUAAAAGUGGCCAA
.......((((....((.(-(((.((((....))))((.......))........)))).)).....))))((((((((......).))))))).(((((((....))))))). ( -27.80)
>consensus
AAAUGAAUAAUGGAACCCU_AUCCCAAGAAUCCUUGGCUAAAAGUGCAGUUAAACGAUGCGGGAAUAAUUGAUUCGCUCAUCGGCGCGGCGAAUGUGGCCAUAAAAGUGGCCAA
.......................(((((....)))))......((((.......(((((.(.((((.....)))).).)))))))))........(((((((....))))))). (-24.85 = -25.41 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:40 2006