| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,792,631 – 2,792,726 |
| Length | 95 |
| Max. P | 0.716402 |
| Location | 2,792,631 – 2,792,726 |
|---|---|
| Length | 95 |
| Sequences | 4 |
| Columns | 95 |
| Reading direction | reverse |
| Mean pairwise identity | 77.54 |
| Mean single sequence MFE | -21.85 |
| Consensus MFE | -11.45 |
| Energy contribution | -12.57 |
| Covariance contribution | 1.13 |
| Combinations/Pair | 1.17 |
| Mean z-score | -2.18 |
| Structure conservation index | 0.52 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716402 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2792631 95 - 23771897 GACAAAAUUCCGUAAUUAUUAAUAGCUUGCACAAUCUGCGGGCUUUGGAUAAAUUGCCUAAUUAGUUGGAAAGUCUACAGGCAAAGGAGGAGAAU .......((((....(((((...((((((((.....))))))))...))))).((((((...(((((....)).))).)))))).))))...... ( -25.70) >DroSec_CAF1 37876 92 - 1 GACAAAACUCCGGAAUUAUUAAUAGCUUGCACAAUCUGCGGGCUUCGGUUAAAUUGCCUAAUUAGUGGGAAAGUCCACUGGCAAAG---GAGAAU .......((((.......(((((((((((((.....))))))))...))))).(((((.....((((((....))))))))))).)---)))... ( -28.90) >DroEre_CAF1 39752 83 - 1 GACAAAAUUCCGGAAUUAUUAAUAGCUCUCACAAUCUGCGGGUCUCAGAUAAAUUACCUAAUUA---------UCCACAGGCAAAG---GAACCU .......((((.............((...........))..((((..(((((.........)))---------))...))))...)---)))... ( -9.30) >DroYak_CAF1 39076 84 - 1 AACAAAAUUCCGGAAUUAUUAAUGGCUUGCACAAUCUGCGGGCCUAGGAUAAAUUACCUAAUUAGUGGUAAAAUCCAAAGG-----------CUU ...........(((.(((((...((((((((.....))))))))...))))).(((((........)))))..))).....-----------... ( -23.50) >consensus GACAAAAUUCCGGAAUUAUUAAUAGCUUGCACAAUCUGCGGGCCUCGGAUAAAUUACCUAAUUAGUGGGAAAGUCCACAGGCAAAG___GAGAAU ...............(((((...((((((((.....))))))))...))))).(((((.....................)))))........... (-11.45 = -12.57 + 1.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:38 2006