| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,791,240 – 2,791,341 |
| Length | 101 |
| Max. P | 0.898722 |
| Location | 2,791,240 – 2,791,341 |
|---|---|
| Length | 101 |
| Sequences | 5 |
| Columns | 107 |
| Reading direction | reverse |
| Mean pairwise identity | 88.77 |
| Mean single sequence MFE | -29.90 |
| Consensus MFE | -21.00 |
| Energy contribution | -20.24 |
| Covariance contribution | -0.76 |
| Combinations/Pair | 1.21 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.70 |
| SVM decision value | 1.00 |
| SVM RNA-class probability | 0.898722 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2791240 101 - 23771897 CAAAUCGACGGUUGGUAAGGAGCCGAGAAUCCGAGUCCGAAUUCGAAUUCGA------AUCUAAAUCGGAAUUGGGAUUGGAAUCGGAAUCGGGCUAACAAGACAAG ....((....((((((..((..((((.(((((.((((((((((((....)))------)).....)))).))).)))))....))))..))..))))))..)).... ( -31.60) >DroSec_CAF1 36499 95 - 1 CAAAUCGACGGUUGGUAAGGAGCCGAGAAUCCGAGUCCGAGUU------CGA------AUCUGAAUCGGAAUUGGGAUUGGAAUCGGAAUCGGGCUAACAAGACAAG ....((....((((((..((..((((...(((((..((((.((------(((------.......))))).))))..))))).))))..))..))))))..)).... ( -31.30) >DroSim_CAF1 26357 95 - 1 CAAAUCGACGGUUGGUAAGGAGCCGAGAAUCCGAGUCCGAAUU------CGA------AUCUGAAUCGGAAUUGGGAUUGGAAUCGGAAUCGGGCUAACAAGACAAG ....((....((((((..((..((((...(((((..((((.((------(((------.......))))).))))..))))).))))..))..))))))..)).... ( -31.30) >DroEre_CAF1 38392 100 - 1 CAAAUCGACGGUUGGUAAGGAGU-GGGAAUCCGAAUCCGAAUC------CGAAUCUGAAUCGGAAUCGGAAUUGGGAUUGGGAUCGAAAUCGGGCUAACAAGACAAG ....((....((((((..((..(-.(..((((.(((((.((((------(((.((((...)))).)))).))).))))).))))).)..))..))))))..)).... ( -32.00) >DroYak_CAF1 37582 94 - 1 CAAAUCGACGGUUGGUAAGGAGC-GGGAAUCCAAAUACGAAUC------CGA------AUCGGAAUCGGAAUUGGAAUUGGGAUCGGAAUCGGGCUAACAAGACAAG ....((....((((((..(((..-.....))).....(((.((------(((------.((.((.((.......)).)).)).))))).))).))))))..)).... ( -23.30) >consensus CAAAUCGACGGUUGGUAAGGAGCCGAGAAUCCGAGUCCGAAUU______CGA______AUCUGAAUCGGAAUUGGGAUUGGAAUCGGAAUCGGGCUAACAAGACAAG ....((....((((((..((..((((...(((((.(((((.((.......((.......)).......)).))))).))))).))))..))..))))))..)).... (-21.00 = -20.24 + -0.76)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:38 2006