Locus 925

Sequence ID 3L_DroMel_CAF1
Location 2,786,918 – 2,787,027
Length 109
Max. P 0.913058
window1424

overview

Window 4

Location 2,786,918 – 2,787,027
Length 109
Sequences 3
Columns 109
Reading direction reverse
Mean pairwise identity 98.78
Mean single sequence MFE -26.87
Consensus MFE -25.63
Energy contribution -25.97
Covariance contribution 0.33
Combinations/Pair 1.00
Mean z-score -2.27
Structure conservation index 0.95
SVM decision value 1.09
SVM RNA-class probability 0.913058
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2786918 109 - 23771897
GUGGCCAAUUAAAUUCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAUAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA
((((((...................((((.(....).)))).......((((....))))..((((((..((.((..((...))..))))...)))))))))).))... ( -24.80)
>DroEre_CAF1 33954 109 - 1
GUGGCCAAUUAAAUGCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAAAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA
((((((.......(((((.......((((.(....).)))).......((((....)))))))))((((((...(.(((.....))).)....)))))))))).))... ( -27.90)
>DroYak_CAF1 33169 109 - 1
GUGGCCAAUUAAAUGCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAAAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA
((((((.......(((((.......((((.(....).)))).......((((....)))))))))((((((...(.(((.....))).)....)))))))))).))... ( -27.90)
>consensus
GUGGCCAAUUAAAUGCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAAAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA
((((((.......(((((.......((((.(....).)))).......((((....)))))))))((((((..((..(.....)..)).....)))))))))).))... (-25.63 = -25.97 +   0.33) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006