Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,786,918 – 2,787,027 |
Length | 109 |
Max. P | 0.913058 |
Location | 2,786,918 – 2,787,027 |
---|---|
Length | 109 |
Sequences | 3 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 98.78 |
Mean single sequence MFE | -26.87 |
Consensus MFE | -25.63 |
Energy contribution | -25.97 |
Covariance contribution | 0.33 |
Combinations/Pair | 1.00 |
Mean z-score | -2.27 |
Structure conservation index | 0.95 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913058 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2786918 109 - 23771897 GUGGCCAAUUAAAUUCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAUAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA ((((((...................((((.(....).)))).......((((....))))..((((((..((.((..((...))..))))...)))))))))).))... ( -24.80) >DroEre_CAF1 33954 109 - 1 GUGGCCAAUUAAAUGCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAAAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA ((((((.......(((((.......((((.(....).)))).......((((....)))))))))((((((...(.(((.....))).)....)))))))))).))... ( -27.90) >DroYak_CAF1 33169 109 - 1 GUGGCCAAUUAAAUGCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAAAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA ((((((.......(((((.......((((.(....).)))).......((((....)))))))))((((((...(.(((.....))).)....)))))))))).))... ( -27.90) >consensus GUGGCCAAUUAAAUGCAUAAAAAUAUGGUUUGAAAAUACCAAUAAUAAUGCAAAUAUGCAGUGCAACGGCAGACGGGAAAUAAUUUCGCUUUAUGUUGUGGCCUGCGAA ((((((.......(((((.......((((.(....).)))).......((((....)))))))))((((((..((..(.....)..)).....)))))))))).))... (-25.63 = -25.97 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:35 2006