| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,781,326 – 2,781,437 |
| Length | 111 |
| Max. P | 0.892969 |
| Location | 2,781,326 – 2,781,437 |
|---|---|
| Length | 111 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 81.17 |
| Mean single sequence MFE | -25.88 |
| Consensus MFE | -15.09 |
| Energy contribution | -15.20 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.12 |
| Mean z-score | -2.81 |
| Structure conservation index | 0.58 |
| SVM decision value | 0.97 |
| SVM RNA-class probability | 0.892969 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2781326 111 + 23771897 AAUCGCAGU-CAAAGCAAAUCGUUUGUGCAAAUUGGCUGCAAUAAAGUGAUUUAU--AUUUUACACAUGUGUGAAAUAAUAUUUGCCACCUUGGCAGGGGGGCACCUUCCUCCA ....(((((-(((.(((.........)))...))))))))..((((....))))(--((((((((....))))))))).....((((.....))))((((((.....)))))). ( -34.10) >DroPse_CAF1 30517 100 + 1 AAUGGCAGU-CAAAGCAAAUCGUUUGUGCAAAUUGGAUGCAAUAGAAUGAUUUAU--AUUUUACACAUGUGUAAAAUAAUAUUUGCCACCUUGACAG---GCCCAC-------- ...(((.((-(((.(((((((((((.((((.......))))...))))))))).(--((((((((....)))))))))......))....)))))..---)))...-------- ( -28.10) >DroEre_CAF1 28316 90 + 1 AAUCGCAGU-CAAAGCAAAUCGUUUGUGCAAAUUGGCUGCAAUAAAGUGAUUUAU--AUUUUACACAUGUGUGAAAUAAUAUUUGCCACCUUA--------------------- ....(((((-(((.(((.........)))...))))))))......(..(....(--((((((((....)))))))))....)..).......--------------------- ( -21.20) >DroWil_CAF1 15886 101 + 1 ACACUCAGUUUGAAGCAAAUCGUUUGUGCAAAUUGGCAACAAUAAAAUGAUUUAUAUAUUUUACACAUGUGUAAUAUAAUAUUUUCCACCUCUGUCUGUGU------------- ((((.(((...((((.(((((((((......((((....)))).))))))))).((((((.(((....))).))))))....)))).....)))...))))------------- ( -18.60) >DroYak_CAF1 26107 100 + 1 AAUCGCAGU-CAAAGCAAAUCGUUUGUGCAAAUUGGCUGCAAUAAAGUGAUUUAU--AUUUUACACAUGUGUGAAAUAAUAUUUGCCGCCUUGGC-------CACCUUCC---- ....(((((-(((.(((.........)))...))))))))......(((.....(--((((((((....)))))))))......(((.....)))-------))).....---- ( -25.00) >DroPer_CAF1 31312 100 + 1 AAUGGCAGU-CAAAGCAAAUCGUUUGUGCAAAUUGGCUGCAAUAGAAUGAUUUAU--AUUUUACACAUGUGUAAAAUAAUAUUUGCCACCUUGACAG---GCCCAC-------- ...(((.((-(((.(((((((((((.((((.......))))...))))))))).(--((((((((....)))))))))......))....)))))..---)))...-------- ( -28.30) >consensus AAUCGCAGU_CAAAGCAAAUCGUUUGUGCAAAUUGGCUGCAAUAAAAUGAUUUAU__AUUUUACACAUGUGUAAAAUAAUAUUUGCCACCUUGGCAG___G_C__C________ ....((((........(((((((((.((((.......))))...)))))))))....((((((((....)))))))).....))))............................ (-15.09 = -15.20 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:30 2006