Locus 921

Sequence ID 3L_DroMel_CAF1
Location 2,780,481 – 2,780,582
Length 101
Max. P 0.668372
window1418

overview

Window 8

Location 2,780,481 – 2,780,582
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 80.01
Mean single sequence MFE -25.67
Consensus MFE -11.38
Energy contribution -11.35
Covariance contribution -0.03
Combinations/Pair 1.12
Mean z-score -2.56
Structure conservation index 0.44
SVM decision value 0.29
SVM RNA-class probability 0.668372
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2780481 101 + 23771897
AAUUUCAACUUGUU-------UU-CAGUCCGCA-----AACGCCGGGCAGCAUGUAAAAUUUAUGUUGCCCACGAUUUAUGCGCAAUUUAUUUGUGCAGCCGA-UUCCGAAA---ACA--
..........((((-------((-(((((.((.-----..((..((((((((((.......)))))))))).)).....(((((((.....))))))))).))-))..))))---)))-- ( -35.90)
>DroVir_CAF1 16750 101 + 1
AAUUUCGACUUGUU-------UUUGCGUCUGC-------ACGCCG-GCAACAUGUAAAAUUUAUGUGGCCAGCGAUUUAUGUGCAAUUUAUUUGUGCAGCCAA-AUACAUAA---AAAAA
..........(((.-------((((.(.((((-------.(((.(-((.(((((.......))))).))).)))........((((.....))))))))))))-).)))...---..... ( -26.40)
>DroPse_CAF1 29351 99 + 1
AAUUUCAACUUGUUU-----UUU-CGGUCUGC-------ACGCCG-GCAACAUGUACAAUUUAUGUGCCCCACGAUUUAUGUGCAAUUUAUUUGUGCAACAG-----CAACAACAACA--
.........(((((.-----((.-(.((.(((-------((...(-(((.((((.......)))))))).((((.....))))..........))))))).)-----.)).)))))..-- ( -18.40)
>DroMoj_CAF1 16878 108 + 1
AAUUUCGACUUGUUUCUUUUUUUCGAGUCUGC-------ACGCCG-GCAACAUGUAAAAUUUAUGUGGCCAGCGAUUUAUGUGCAAUUUAUUUGUGCAGCCGA-AUACAUAA---AAAAA
...(((((((((...........)))))).((-------.(((.(-((.(((((.......))))).))).))).....((..(((.....)))..)))).))-).......---..... ( -28.60)
>DroAna_CAF1 16606 108 + 1
AAUUUCAACUUGUU-------UU-CAGUUUUCAGUCUGCACGCCG-GCAACAUGUAAAAUUUAUGUUGCCCACGAUUUAUGCGCAAUUUAUUUGUGCAGCCAAAAUACAAAA---ACAAA
.........(((((-------((-..(((((......((.((..(-((((((((.......)))))))))..)).....(((((((.....))))))))).)))))...)))---)))). ( -26.50)
>DroPer_CAF1 30136 96 + 1
AAUUUCAACUUGUUU-----UUU-CGGUCUGC-------ACGCCG-GCAACAUGUACAAUUUAUGUGCCCCACGAUUUAUGUGCAAUUUAUUUGUGCAACAG-----CAACA---ACA--
...............-----...-..((.(((-------.((..(-(((.((((.......))))))))...)).....((..(((.....)))..))...)-----)))).---...-- ( -18.20)
>consensus
AAUUUCAACUUGUU_______UU_CAGUCUGC_______ACGCCG_GCAACAUGUAAAAUUUAUGUGGCCCACGAUUUAUGUGCAAUUUAUUUGUGCAGCCGA_AUACAAAA___ACA__
........................................((..(.((.(((((.......))))).)))..)).....(((((((.....)))))))...................... (-11.38 = -11.35 +  -0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:29 2006