Locus 92

Sequence ID 3L_DroMel_CAF1
Location 343,214 – 343,451
Length 237
Max. P 0.756455
window129 window130

overview

Window 9

Location 343,214 – 343,334
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 98.33
Mean single sequence MFE -55.77
Consensus MFE -54.43
Energy contribution -54.43
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.73
Structure conservation index 0.98
SVM decision value 0.49
SVM RNA-class probability 0.756455
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 343214 120 + 23771897
CACCCGUAGCCCCUCCUGCCCCCUUUACGGGAACUAGGGCUCCGGAGGAGGGCGUUUGGAAUCCGCCGGGAGUGGCUGCUCCGCCCUCGCGUUGGGUUCUAAACGGCGUGGCAAUCACUG
(((((...((((((((.(((((((....))).....))))...))))..))))((((((((((((.((.(((.(((......)))))).)).)))))))))))))).))).......... ( -56.30)
>DroSec_CAF1 15796 120 + 1
CACCCGUAGCCCCUCCUGACCCCUUUACGGGAACUAGGGCACCGGAGGAGGGCGUUUGGAAUCCGCCGGGAGUGGCUGCUCCGCCCUCGCGUUGGGUUCUAAACGGCGUGGCAAUUACUG
(((((...((((((((.(..((((....(....).))))..).))))..))))((((((((((((.((.(((.(((......)))))).)).)))))))))))))).))).......... ( -53.90)
>DroSim_CAF1 15373 120 + 1
CACCCGUAGCCCCUCCUGCCCCCUUUACGGGAACUAGGGCACCGGAGGAGGGCGUUUGGAAUCCGCCGGGAGUGGCUGCUCCGCCCUCGCGUUGGGUUCUAAACGGCGUGGCAAUCACUG
(((((...((((((((((((((((....))).....)))))..))))..))))((((((((((((.((.(((.(((......)))))).)).)))))))))))))).))).......... ( -57.10)
>consensus
CACCCGUAGCCCCUCCUGCCCCCUUUACGGGAACUAGGGCACCGGAGGAGGGCGUUUGGAAUCCGCCGGGAGUGGCUGCUCCGCCCUCGCGUUGGGUUCUAAACGGCGUGGCAAUCACUG
(((((...((((((((.(..((((....(....).))))..).))))..))))((((((((((((.((.(((.(((......)))))).)).)))))))))))))).))).......... (-54.43 = -54.43 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 0

Location 343,334 – 343,451
Length 117
Sequences 3
Columns 117
Reading direction reverse
Mean pairwise identity 98.86
Mean single sequence MFE -36.27
Consensus MFE -36.49
Energy contribution -36.27
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -1.33
Structure conservation index 1.01
SVM decision value 0.00
SVM RNA-class probability 0.535373
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 343334 117 - 23771897
ACAUGAUGGCCCUCACCCACACAGAGACGCCACUCAAAGGUGGCCUGAACACACCGCUGCACGAGUCAGACUUCUCCGGCGUGCUGCCCAAGGCGGCCUCCAUCGCCACGCCUAACA
...(((((((.(((.........)))..)))).))).(((((((((...(((((.((((...(((........)))))))))).))....))))(((.......))).))))).... ( -35.00)
>DroSec_CAF1 15916 117 - 1
ACAUGAUGGCCCUCACCCACACAGAGACGCCACUCAAAGGCGGCCUGAACACACCGCUGCACGAGUCAGACUUCUCCGGCGUGCUGCCCAAGGCGGCCUCCAUCGCCACGCCUAACA
...(((((((.(((.........)))..)))).))).(((((((((...(((((.((((...(((........)))))))))).))....))))(((.......))).))))).... ( -36.90)
>DroSim_CAF1 15493 117 - 1
ACAUGAUGGCCCUCACCCCCACAGAGACGCCACUCAAAGGCGGCCUGAACACACCGCUGCACGAGUCAGACUUCUCCGGCGUGCUGCCCAAGGCGGCCUCCAUCGCCACGCCUAACA
...(((((((.(((.........)))..)))).))).(((((((((...(((((.((((...(((........)))))))))).))....))))(((.......))).))))).... ( -36.90)
>consensus
ACAUGAUGGCCCUCACCCACACAGAGACGCCACUCAAAGGCGGCCUGAACACACCGCUGCACGAGUCAGACUUCUCCGGCGUGCUGCCCAAGGCGGCCUCCAUCGCCACGCCUAACA
...(((((((.(((.........)))..)))).))).(((((((((...(((((.((((...(((........)))))))))).))....))))(((.......))).))))).... (-36.49 = -36.27 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:08 2006