| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,777,866 – 2,777,958 |
| Length | 92 |
| Max. P | 0.586893 |
| Location | 2,777,866 – 2,777,958 |
|---|---|
| Length | 92 |
| Sequences | 6 |
| Columns | 113 |
| Reading direction | reverse |
| Mean pairwise identity | 79.80 |
| Mean single sequence MFE | -31.48 |
| Consensus MFE | -16.96 |
| Energy contribution | -18.63 |
| Covariance contribution | 1.67 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.94 |
| Structure conservation index | 0.54 |
| SVM decision value | 0.11 |
| SVM RNA-class probability | 0.586893 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2777866 92 - 23771897 CGGAGGCACCACCACGCCAGCCCCA------CCUCCUACAGUGGUGGCCCAGCCCGCCUCCUCGCCCAUGCAGCCAC---CUAACCA------------AGCGGUGCCCCAGU .((.((((((.....((..((((((------(........)))).)))...))..........((....))......---.......------------...))))))))... ( -28.50) >DroSec_CAF1 23185 92 - 1 CGGAGGCACCACCACGCCAGCCCCA------CCUCCUACAGUGGUGGCCCAGCCCGCCUCCUCGCCCAUGCAGCCAC---CCAACCA------------GGCGGUGCCCCAGU .((.((((((.((..((..((((((------(........)))).)))...))..........((....))......---.......------------)).))))))))... ( -32.10) >DroEre_CAF1 24818 92 - 1 CGGUGGCACCACCACGCCAGCCCCA------CCGCCCACAGUGGUGGCCCAGCCCGCCUCGUCGCCCAUGCAGCCAC---CCAACCA------------GGCGGUGCCCCAGU .((.((((((.((..((..((.(((------((((.....)))))))....))..))...((.((....)).))...---.......------------)).))))))))... ( -34.60) >DroYak_CAF1 22480 92 - 1 CGGAGGCACCACCACACCAGCCCCA------CCACCCACAGUGGUGGCCCAGCCCGCCUCCUCGCCCAUGCAGCCAC---CCAACCA------------GGCGGUGCCACAGU ....((((((.........((.(((------((((.....)))))))........((......))....)).(((..---.......------------)))))))))..... ( -30.10) >DroAna_CAF1 13928 89 - 1 CGGAGGCACCACCACACCAGCUCCCGCUGUCCCCGCCACAGUGGUGGCCCAGCCCGCCUCCUCGCCGAUGCAGCCUC---CCA---------------------UUCCACAAU .((((((.(((((((..((((....)))).....(...).)))))))........((.((......)).)).)))))---)..---------------------......... ( -29.10) >DroPer_CAF1 27169 104 - 1 CGGGGGCACCAGCACGCCCGCCCCC------CCGGCCACAGU---GGCCCAGCCCGCCUCGUCGCCCAUGCAACCACUCCCCAAUCAAGGCCAGCCCCUGGCAGUGCCCCAAA ..(((((((..(((((...((....------..((((.....---))))......))..))).))........................(((((...))))).)))))))... ( -34.50) >consensus CGGAGGCACCACCACGCCAGCCCCA______CCGCCCACAGUGGUGGCCCAGCCCGCCUCCUCGCCCAUGCAGCCAC___CCAACCA____________GGCGGUGCCCCAGU .((.(((((((((((.........................)))))(((...((..((......))....)).)))...........................))))))))... (-16.96 = -18.63 + 1.67)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:26 2006