Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,776,890 – 2,776,985 |
Length | 95 |
Max. P | 0.913616 |
Location | 2,776,890 – 2,776,985 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | forward |
Mean pairwise identity | 76.57 |
Mean single sequence MFE | -40.08 |
Consensus MFE | -24.58 |
Energy contribution | -27.22 |
Covariance contribution | 2.64 |
Combinations/Pair | 1.21 |
Mean z-score | -1.87 |
Structure conservation index | 0.61 |
SVM decision value | 1.09 |
SVM RNA-class probability | 0.913616 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2776890 95 + 23771897 AUUUUAUUUGGCUGC---------GGAGGACCAAGUAAGCCAGGCUCGGUCUUGAUGUACUGCGAGUGAUAGUCCUGGCCCGGUGGCGGUCCUCCGGCGGCAUG ..........(((((---------((((((((..((..(((.((((.((.((.....(((.....)))..)).)).)))).))).)))))))))).)))))... ( -41.30) >DroVir_CAF1 12827 91 + 1 AUUUUGUUUGGUUGUCCGCCCGGCGGUGGCGGCAAUAGACCCGGCUCCGUCUUGAUAUAUUGCCCGUGAUAGUCCUGACCGC-UG-------CCCGGCG----- .........((....))(((.((((((((.(((((((((..((....))..))....)))))))((.(.....).)).))))-))-------)).))).----- ( -30.10) >DroSec_CAF1 22205 95 + 1 AUUUUAUUUGGCUGU---------GGAGGACCAAGUAAGCCGGGCUCGGUCUUGAUGUACUGCGAAUGAUAGUCCUGGCCCGGUGGCGGUCCUCCGGCGGCAUG ..........(((((---------((((((((..((..((((((((.((.((..................)).)).)))))))).)))))))))).)))))... ( -43.17) >DroEre_CAF1 23830 95 + 1 AUUUUGUUGGGCUGC---------GGAGGACCCAGUAAACCGGGCUCGGUCUUGAUGUACUGCGAGUGAUAGUCCUGGCCCGGUGGCGGUCCUCCGGCGGCAUG ..........(((((---------(((((((((.....((((((((.((.((.....(((.....)))..)).)).)))))))).).)))))))).)))))... ( -47.60) >DroYak_CAF1 21468 95 + 1 AUUUUGUUCGGCUGC---------GGAGGACCAAGUAAACCGGGCUCCGUUUUGAUGUACUGCGAGUGAUAGUCCUGGCCCGGUGGCGGUCCUCCGGCGGCAUG ..........(((((---------((((((((..((..((((((((.......(((.(((.....)))...)))..)))))))).)))))))))).)))))... ( -41.70) >DroAna_CAF1 12850 87 + 1 AUUUUGUUGGGCUGC---------GGCGGCCCCAGCAGGCCCGGCUCGGUCUUGAUGUACUGACCGUGGUAUUCUUGGCCGGG-----AUGCACCGGCGGC--- ...(((((((((((.---------..))).))))))))((((((.((((((.....).)))))))).))).......(((((.-----.....)))))...--- ( -36.60) >consensus AUUUUGUUUGGCUGC_________GGAGGACCAAGUAAACCGGGCUCGGUCUUGAUGUACUGCGAGUGAUAGUCCUGGCCCGGUGGCGGUCCUCCGGCGGCAUG ..........(((((.........((((((((......((((((((.((.((.....(((.....)))..)).)).))))))))...)))))))).)))))... (-24.58 = -27.22 + 2.64)
Location | 2,776,890 – 2,776,985 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 104 |
Reading direction | reverse |
Mean pairwise identity | 76.57 |
Mean single sequence MFE | -32.52 |
Consensus MFE | -17.11 |
Energy contribution | -17.95 |
Covariance contribution | 0.84 |
Combinations/Pair | 1.29 |
Mean z-score | -1.89 |
Structure conservation index | 0.53 |
SVM decision value | 0.50 |
SVM RNA-class probability | 0.761941 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2776890 95 - 23771897 CAUGCCGCCGGAGGACCGCCACCGGGCCAGGACUAUCACUCGCAGUACAUCAAGACCGAGCCUGGCUUACUUGGUCCUCC---------GCAGCCAAAUAAAAU ...((.((.(((((((((.....((((((((.......((((..((........))))))))))))))...)))))))))---------)).)).......... ( -35.01) >DroVir_CAF1 12827 91 - 1 -----CGCCGGG-------CA-GCGGUCAGGACUAUCACGGGCAAUAUAUCAAGACGGAGCCGGGUCUAUUGCCGCCACCGCCGGGCGGACAACCAAACAAAAU -----((((.((-------(.-(.(((..(........).(((((((.(((....((....))))).)))))))))).).))).))))................ ( -29.40) >DroSec_CAF1 22205 95 - 1 CAUGCCGCCGGAGGACCGCCACCGGGCCAGGACUAUCAUUCGCAGUACAUCAAGACCGAGCCCGGCUUACUUGGUCCUCC---------ACAGCCAAAUAAAAU ...((.(..(((((((((...((((((..((.((..................)).))..))))))......)))))))))---------.).)).......... ( -31.37) >DroEre_CAF1 23830 95 - 1 CAUGCCGCCGGAGGACCGCCACCGGGCCAGGACUAUCACUCGCAGUACAUCAAGACCGAGCCCGGUUUACUGGGUCCUCC---------GCAGCCCAACAAAAU ...((.((.((((((((...(((((((..((.((..................)).))..)))))))......))))))))---------)).)).......... ( -35.87) >DroYak_CAF1 21468 95 - 1 CAUGCCGCCGGAGGACCGCCACCGGGCCAGGACUAUCACUCGCAGUACAUCAAAACGGAGCCCGGUUUACUUGGUCCUCC---------GCAGCCGAACAAAAU ...((.((.(((((((((..((((((((((........))....((........)).).))))))).....)))))))))---------)).)).......... ( -33.40) >DroAna_CAF1 12850 87 - 1 ---GCCGCCGGUGCAU-----CCCGGCCAAGAAUACCACGGUCAGUACAUCAAGACCGAGCCGGGCCUGCUGGGGCCGCC---------GCAGCCCAACAAAAU ---((.(((((.....-----.)))))...........(((((..........))))).)).((((.(((.((.....))---------)))))))........ ( -30.10) >consensus CAUGCCGCCGGAGGACCGCCACCGGGCCAGGACUAUCACUCGCAGUACAUCAAGACCGAGCCCGGCUUACUGGGUCCUCC_________GCAGCCAAACAAAAU .........((((((((....((((((...(.....)............((......)))))))).......))))))))........................ (-17.11 = -17.95 + 0.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:23 2006