| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,775,623 – 2,775,731 |
| Length | 108 |
| Max. P | 0.860614 |
| Location | 2,775,623 – 2,775,731 |
|---|---|
| Length | 108 |
| Sequences | 6 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 75.12 |
| Mean single sequence MFE | -35.10 |
| Consensus MFE | -24.58 |
| Energy contribution | -23.95 |
| Covariance contribution | -0.63 |
| Combinations/Pair | 1.42 |
| Mean z-score | -1.31 |
| Structure conservation index | 0.70 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860614 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2775623 108 - 23771897 -GAUUG-AUA-AUUUUGUAUAUUUGUUAU-CCAGAUGCAUAGCUGCAUAUAUUGUAGUGUGUAUGGUGGCCUGGGAUGGAAUGCCCCGUCUGGAGGCGGAUAACGCUUACAA -.....-...-...(((((....((((((-((..(((((((.(((((.....))))))))))))....((((.((((((......)))))).).)))))))))))..))))) ( -37.60) >DroVir_CAF1 11106 110 - 1 -AACUGAGUGUAUAUUCUCGCUUACCUAU-ACAGAUGCAUUGCCGCAUACAUCGUGGUGUGCAUGGUGGCCUGGGAUGGCAUGCCGCGCCUGGAGGCAGACAAUGCCUACAA -...((((((........)))))).....-.(((.(((......((((((......))))))..(((((((......))).))))))).))).(((((.....))))).... ( -35.30) >DroPse_CAF1 24002 106 - 1 -CAUUG-CUG----UUGUUUCCUCCUCCUCUCAGGUGCAUAGCCGCCUACAUUGUGGUCUGCAUGGUGGCCUGGGACGGGAUGCCGCGGCUGGAGGCAGACAAUGCCUACAA -....(-(.(----((((((((((((((((((((((((......))...(((..((.....))..))))))))))).)))..((....)).))))).)))))))))...... ( -40.00) >DroEre_CAF1 22565 108 - 1 -GGUUA-AUA-AUUUUCCGUAUUUCUUAU-CUAGAUGCAUAGCCGCAUACAUUGUAGUGUGUAUGGUGGCCUGGGAUGGAAUGCCUCGCCUGGAGGCGGAUAAUGCCUACAA -(((..-...-(((.((((((((((...(-((((..((...((((.((((((....)))))).)))).)))))))..)))))))...(((....)))))).))))))..... ( -32.20) >DroWil_CAF1 10519 109 - 1 -UGUGA-CUA-AUUGUUAAAAUCCUUUCUUGCAGAUGUAUAGCCGCUUAUAUAGUGGUCUGCAUGGUGGCCUGGGAUGGCAUGCCACGUCUGGAGGCGGACAAUGCCUAUAA -..(((-(..-...))))..(((((...(..(..(((((..((((((.....)))))).))))).)..)...)))))(((((....((((....))))....)))))..... ( -32.90) >DroAna_CAF1 11554 105 - 1 UCCUUGACUA-AUCUUCCUGA-----UCU-UCAGAUGCAUUGCCGCCUACAUUGUGGUGUGCAUGGUGGCCUGGGACGGAAUGCCACGUUUGGAGGCGGACAACGCCUACAA (((..(((..-......(((.-----...-.)))..(((((.((((((((((..((.....))..)))...)))).))))))))...))).)))((((.....))))..... ( -32.60) >consensus _CAUUG_CUA_AUUUUCUAUAUUCCUUAU_CCAGAUGCAUAGCCGCAUACAUUGUGGUGUGCAUGGUGGCCUGGGAUGGAAUGCCACGUCUGGAGGCGGACAAUGCCUACAA ..............................((((((((((.(((((.......))))))))))).(((((.(........).)))))..))))(((((.....))))).... (-24.58 = -23.95 + -0.63)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:21 2006