Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,774,069 – 2,774,174 |
Length | 105 |
Max. P | 0.541234 |
Location | 2,774,069 – 2,774,174 |
---|---|
Length | 105 |
Sequences | 6 |
Columns | 111 |
Reading direction | forward |
Mean pairwise identity | 77.10 |
Mean single sequence MFE | -46.02 |
Consensus MFE | -25.45 |
Energy contribution | -24.76 |
Covariance contribution | -0.69 |
Combinations/Pair | 1.38 |
Mean z-score | -1.60 |
Structure conservation index | 0.55 |
SVM decision value | 0.02 |
SVM RNA-class probability | 0.541234 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2774069 105 + 23771897 UCAGAGGUGGCACGCCUGCCACCGUUCCUCCUGGACCUCCUCCUCCUAGUCCA------CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGGGGCGUUGGCCACUGGCCGU .(((.(((((((....)))))))........(((((............)))))------.....)))(((((.(((((((...)).))))))))))..((((...)))).. ( -40.30) >DroPse_CAF1 22442 102 + 1 UGAGGGGCGGAACACCGGCUAC------UCCGGGGGGUCCUCCUCCCAAUCCCGGAGGUCCGGCCUGGGCGCCCAUGCCCAUG---GCGUGCGGCGCCGGCCAGUUGCCGU ......(((((((...((...(------(((((((((.......)))...)))))))..))((((..((((((((((((...)---))))).)))))))))).))).)))) ( -57.40) >DroSec_CAF1 19228 105 + 1 UCAGAGGUGGCACGCCUGCCACCGUUCCUCCUGGACCUCCUCCUCCUAAUCCA------CCCACCUGCGCCUGCAUGCCCAUUGGAGCAUGGGGCGUUGGCCACUGCCCGU .(((.(((((((....)))))))(.(((....))).)................------....((.((((((.(((((((...)).))))))))))).))...)))..... ( -37.00) >DroEre_CAF1 21013 105 + 1 UCAGAGGUGGCACUCCUGCCACCGCGCCUCCUGGUCCUCCUCCUCCCAGUCCG------CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGGGGCGUUGGCCACUGGCCGU .....(((((((....)))))))(.(((....))).)........(((((..(------((.....((((((.(((((((...)).))))))))))).))).))))).... ( -42.50) >DroYak_CAF1 18641 105 + 1 UCAGAGGUGGCACACCUGCCACCGCGCCUCCUGGAACACCUCCUCCCAGUCCG------CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGAGGCGUUGGCCACUGGCCGU .....(((((((....)))))))(((......(((.....)))..(((((..(------((.....((((((.(((((((...)).))))))))))).))).))))).))) ( -43.40) >DroPer_CAF1 22236 102 + 1 UGAGGGGCGGAACACCUGCUAC------UCCGGGGGGUCCUCCUCCCAAUCCCGGAGGUCCGGCCUGGGCGCCCAUGCCCAUG---GCGUGCGGCGCCGGCCAGUUGCCGU ...(((((((.....))))).(------(((((((((.......)))...)))))))..))((((..((((((((((((...)---))))).))))))))))......... ( -55.50) >consensus UCAGAGGUGGCACACCUGCCACCG__CCUCCUGGACCUCCUCCUCCCAAUCCA______CCCACCUGCGCCUGCAUGCCCAUCGGAGCAUGGGGCGUUGGCCACUGGCCGU ....(((((((......)))...........((((..............)))).........))))((((((.(((((........)))))))))))((((.....)))). (-25.45 = -24.76 + -0.69)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:18 2006