Locus 911

Sequence ID 3L_DroMel_CAF1
Location 2,768,395 – 2,768,492
Length 97
Max. P 0.931391
window1402

overview

Window 2

Location 2,768,395 – 2,768,492
Length 97
Sequences 5
Columns 112
Reading direction forward
Mean pairwise identity 72.23
Mean single sequence MFE -17.18
Consensus MFE -2.05
Energy contribution -2.77
Covariance contribution 0.72
Combinations/Pair 1.25
Mean z-score -2.01
Structure conservation index 0.12
SVM decision value 1.21
SVM RNA-class probability 0.931391
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2768395 97 + 23771897
AACUUGAUUGCAG------CCAUG-------GCAACA-AAUUUUAUUUAAGAUUUCUUCGCCAACGAU-UUCGCAGUAAUUAUUAUUCUUAUCAAGGCAAUCAAUCAGUUAA
((((.(((((..(------((.((-------((((.(-((((((....))))))).)).)))).((..-..))......................)))...))))))))).. ( -19.20)
>DroSec_CAF1 13588 98 + 1
AACUUGAUUGCAG------CCAUG-------GCAAGAAAUUUUUAUUUAAGAUUUCUUCGCCGACGAU-UUCACAGUAAUUAUUAUUUUUAUCAAGGCCAUCAAUCACUUAA
....((((((..(------((.((-------((((((((((((.....)))))))))).))))..(((-.....((((.....))))...)))..)))...))))))..... ( -23.30)
>DroSim_CAF1 3816 98 + 1
AACUUGAUUGUUU------UCCUG-------GCAACC-AUUUUUCUUUCUUAUCUUUUUUCUGAUUCUAUUCUCAGUAAUUAUGAUUUUUAUCAAGGCUAUCAAUCUAUUAA
.....(((((...------.(((.-------......-......................((((........))))......((((....)))))))....)))))...... ( -10.80)
>DroEre_CAF1 15284 110 + 1
AACUUGAGUUAACAAGUUAACAAAGUUAACGCCAACC-AUUUUUUUUUAAGAUUUCUUCGGCUACGAU-UUCCCAGUAAUUAUUAUUUUUAUCAGGGCAAUCAAUCAUUUAA
(((((..(((((....))))).)))))...(((....-(((((.....)))))......)))...(((-(.(((.((((.........))))..))).)))).......... ( -16.10)
>DroYak_CAF1 12935 87 + 1
AACUUGAUUGCAG------CCAUA-------GCAACC-----------AAGAUUUCUUUGUCUGCGAU-UCCCCAGUAAUUAUUAUUUUUAUCAGGGCUAUCAAUCAUUUUA
....((((((.((------((...-------(((..(-----------(((.....))))..)))(((-.....((((.....))))...)))..))))..))))))..... ( -16.50)
>consensus
AACUUGAUUGCAG______CCAUG_______GCAACC_AUUUUUAUUUAAGAUUUCUUCGCCGACGAU_UUCCCAGUAAUUAUUAUUUUUAUCAAGGCAAUCAAUCAUUUAA
..(((((((((....................))))......................(((....)))........................)))))................ ( -2.05 =  -2.77 +   0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:13 2006