Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,768,061 – 2,768,165 |
Length | 104 |
Max. P | 0.912344 |
Location | 2,768,061 – 2,768,165 |
---|---|
Length | 104 |
Sequences | 5 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 68.95 |
Mean single sequence MFE | -22.56 |
Consensus MFE | -8.62 |
Energy contribution | -9.66 |
Covariance contribution | 1.04 |
Combinations/Pair | 1.32 |
Mean z-score | -2.03 |
Structure conservation index | 0.38 |
SVM decision value | 1.08 |
SVM RNA-class probability | 0.912344 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2768061 104 + 23771897 --------AAUCUAAAUGGCGAAUGGGAAAUUGAGCCAUAAACGGGUUUCAUC-CAACAUUAACAGACACUCCCAUUUAGUUUCUUAAUUUU------UUUAAGACCUCAUAAA-AUUCU --------...((((((((.((.(((((....(((((.......)))))..))-)..(.......).)).))))))))))..((((((....------.)))))).........-..... ( -18.60) >DroSec_CAF1 13266 95 + 1 AUAUGGGUAAUCUAAAUGGGGAA-------UGGAGCCAUAAACGGGUUUCAUU-CAACCUCAAC-GACACUCCCAUUU----------UUUU------UUUAAGACCCCAUAAAAGUUCU .((((((...(((((((((((((-------(((((((.......)))))))))-)...(.....-).....)))))))----------....------....))).))))))........ ( -25.60) >DroSim_CAF1 3468 113 + 1 CUAUGGGUAAUCUAAAUGGGGAAUGGGAAAUGGAGCCAUAAACGGGUUUCAUC-CAACAUCAACAGACAAUCCCAUUUAGUUUCUUCAUUUU------UUUAAGACCCCAUAAAAAUUCU .((((((....((((((((((....(((..(((((((.......)))))))))-)....((....))...))))))))))..((((.(....------.).)))).))))))........ ( -29.40) >DroEre_CAF1 15033 117 + 1 CUGUGGCAAGUCGAAAUGGGAAAUUUUAAAUGGAUUUUUAAACAGGUUUUACCUCGAAGUCAAC--ACACUCCCAAUUAGUUUAUAACUUUUAGGGUCUCUAA-ACCCAUUUAAAGUUCU .((((.....((((....((((((((.....)))))))).....((.....))))))......)--)))................((((((..((((......-))))....)))))).. ( -18.60) >DroYak_CAF1 12600 109 + 1 ----------UCUAAAUGAAGAAUGGACAAUAGAGCUCUAAACAGGUUUUACCUGAACAUCAAUAGACACUCCCAUUUAGUUUCUUAAUUUUAGGGCCUCUAA-ACCCACUUAAAAUUCU ----------.............(((....((((((((((((((((.....)))).........(((.(((.......))).)))....))))))).))))).-..)))........... ( -20.60) >consensus _U_UGG__AAUCUAAAUGGGGAAUGGGAAAUGGAGCCAUAAACGGGUUUCAUC_CAACAUCAACAGACACUCCCAUUUAGUUUCUUAAUUUU______UUUAAGACCCCAUAAAAAUUCU ...........((((((((((.........(((((((.......)))))))........((....))...))))))))))........................................ ( -8.62 = -9.66 + 1.04)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:12 2006