Locus 91

Sequence ID 3L_DroMel_CAF1
Location 342,479 – 342,571
Length 92
Max. P 0.918132
window128

overview

Window 8

Location 342,479 – 342,571
Length 92
Sequences 3
Columns 92
Reading direction forward
Mean pairwise identity 98.55
Mean single sequence MFE -35.77
Consensus MFE -34.50
Energy contribution -35.17
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -2.22
Structure conservation index 0.96
SVM decision value 1.12
SVM RNA-class probability 0.918132
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 342479 92 + 23771897
GGUAGGUAAAGAACCUGGCCGAGGCACUCCUGCCACACCUGGGCAUAAACGUCUAGGGGCAGUUCGCCAUGCGCCAUGCGCUCCUUCACCAC
(((.(((...((((...(((..((((....))))...(((((((......)))))))))).)))))))..((((...))))......))).. ( -35.20)
>DroSec_CAF1 15061 92 + 1
GGUAGGUAAAGUACCUGGCCGAGGCACUCCUGCCACACCUGGGCAUAAACGUCUAGGGGCAGUUCGCCAUGCGCCAUGCGCUCCUUCACCAC
((((((...((..(.((((((.(((....(((((...(((((((......))))))))))))...))).)).)))).)..)))))..))).. ( -36.90)
>DroSim_CAF1 14638 92 + 1
GGUAGGUAAAGUACCUGGCCGAGGCACUCCUGCCACACCUGGGCAUAAACGUCUAGGGGCAGUUCGCCAUGCGCCAUCCGCUCCUUCACCAC
((((((...(((...((((((.(((....(((((...(((((((......))))))))))))...))).)).))))...))))))..))).. ( -35.20)
>consensus
GGUAGGUAAAGUACCUGGCCGAGGCACUCCUGCCACACCUGGGCAUAAACGUCUAGGGGCAGUUCGCCAUGCGCCAUGCGCUCCUUCACCAC
((((((...(((.(.((((((.(((....(((((...(((((((......))))))))))))...))).)).)))).).))))))..))).. (-34.50 = -35.17 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:06 2006