| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,763,058 – 2,763,163 |
| Length | 105 |
| Max. P | 0.994813 |
| Location | 2,763,058 – 2,763,163 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.81 |
| Mean single sequence MFE | -47.60 |
| Consensus MFE | -28.99 |
| Energy contribution | -29.78 |
| Covariance contribution | 0.79 |
| Combinations/Pair | 1.13 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.61 |
| SVM decision value | 2.51 |
| SVM RNA-class probability | 0.994813 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2763058 105 + 23771897 UGAAUGUGCUGAUUGAAGAGAACAGCUUGGAUGUGGAG------UUGGAGGAGGAUCCUGC---------CACGGCUCCACCUGUGUUCUUCCGCGAGGUGAUCUUCAGUCCAGCACUAC .....((((((((((((((..((..(.((((.((((((------(((..(.((....)).)---------..))))))))).........)))).)..))..)))))))).))))))... ( -44.10) >DroSim_CAF1 118676 105 + 1 UGAAUGUGCUGAUUGAAGAGAACAGCUUGGAUGUGGAG------UUGGAGGAGGAUACCGC---------CACGGCUUCACCUGUGUUCUUCCGCGAGGUGAUCUUCAGUCCAGCACUAC .....((((((((((((((..((..(.((((.((((((------(((..((.((...)).)---------).))))))))).........)))).)..))..)))))))).))))))... ( -40.30) >DroAna_CAF1 116570 120 + 1 UGAAUGUGCUCAUCGAAGAGCACAGCCUGGAAGCGGAGCCGGAACUGGAGGAGGAAUCGGGCGGCGGAGCGGAGGCCCCGCCCACCUUCUUCCGCGAGGUGAUCUUCAGUCCGGCCCUGC ....(((((((......)))))))........((((.((((((.((((((((((....((((((.((........))))))))..))))))))..((((....)))))))))))).)))) ( -58.40) >consensus UGAAUGUGCUGAUUGAAGAGAACAGCUUGGAUGUGGAG______UUGGAGGAGGAUACCGC_________CACGGCUCCACCUGUGUUCUUCCGCGAGGUGAUCUUCAGUCCAGCACUAC .....((((((((((((((.....((((...(((((((........((.((((......................)))).)).......)))))))))))..)))))))).))))))... (-28.99 = -29.78 + 0.79)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:11 2006