Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,740,093 – 2,740,186 |
Length | 93 |
Max. P | 0.997532 |
Location | 2,740,093 – 2,740,186 |
---|---|
Length | 93 |
Sequences | 5 |
Columns | 97 |
Reading direction | forward |
Mean pairwise identity | 76.82 |
Mean single sequence MFE | -28.92 |
Consensus MFE | -17.44 |
Energy contribution | -18.12 |
Covariance contribution | 0.68 |
Combinations/Pair | 1.12 |
Mean z-score | -2.75 |
Structure conservation index | 0.60 |
SVM decision value | 2.88 |
SVM RNA-class probability | 0.997532 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2740093 93 + 23771897 UUCUCUAAAUAGUUUUGCGUGCGACGCAGCAGAAUCGG--CGACCAGGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG .................(((((..((((((.......)--)..((.((.--....))........((((((....))))))))....))))))))). ( -30.70) >DroSec_CAF1 95664 80 + 1 UUCUCUAAAUAGUUUUGCGUGCGACGCAGCA---------------GGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG .................(((((..((((...---------------((.--....))........((((((....))))))......))))))))). ( -27.50) >DroSim_CAF1 94470 80 + 1 UUCUCUAAAUAGUUUUGCGUGCUACGCAGCA---------------GGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG .................(((((..((((...---------------((.--....))........((((((....))))))......))))))))). ( -27.50) >DroYak_CAF1 97754 87 + 1 UUCUCUAAAUAGUUUUGCGUGCGACGCAGCAG--------CAGCCAGGG--AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCGUGG ...............((((.....))))((.(--------((.((.((.--....))........((((((....)))))).))...))).)).... ( -29.10) >DroMoj_CAF1 106216 84 + 1 UUCUCUAAAUAGUUUUGCGUGCGACGCAAUGCG-AGAGCA------UGGCAAGAGCCAAGGG--GCGAGAGGCAAGAGGCAGGAGACUGUGCC---- .((((.......((((((((((..(((...)))-...)))------).))))))(((....)--))))))(((.....((((....)))))))---- ( -29.80) >consensus UUCUCUAAAUAGUUUUGCGUGCGACGCAGCA_______________GGG__AAAACCAAGGAAAAUGCGAGGAAACUCGCAGGGAAAUGCGGCACGG ((((((........(((((.....))))).....................................(((((....)))))))))))........... (-17.44 = -18.12 + 0.68)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:07 2006