Locus 906

Sequence ID 3L_DroMel_CAF1
Location 2,734,694 – 2,734,791
Length 97
Max. P 0.901602
window1394

overview

Window 4

Location 2,734,694 – 2,734,791
Length 97
Sequences 6
Columns 108
Reading direction forward
Mean pairwise identity 77.65
Mean single sequence MFE -28.62
Consensus MFE -13.44
Energy contribution -14.58
Covariance contribution 1.14
Combinations/Pair 1.26
Mean z-score -2.44
Structure conservation index 0.47
SVM decision value 1.02
SVM RNA-class probability 0.901602
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2734694 97 + 23771897
GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU-UGCCGGCAUUAAUUGCCCGC--------UGCAC-GAGCGGCAACUACUCUAAUUAA-AGAUACAUAACUG
((((((((((((.(((((......(((((....))))-)...((((.....)))))))--------)).))-))))))))))............-............. ( -31.90)
>DroSec_CAF1 94511 97 + 1
GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU-UGCCGGCAUUAAUUGCCCGC--------UGCGC-GAGCGGCAACUACUCUAAUUAA-AGAUACAUAACUU
((((((((((((.(((((......(((((....))))-)...((((.....)))))))--------)).))-))))))))))............-............. ( -32.20)
>DroSim_CAF1 93313 97 + 1
GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU-UGCCGGCAUUAAUUGCCCGC--------UGCGC-GAGCGGCAACUACUCUAAUUAA-AGAUACAUAACUU
((((((((((((.(((((......(((((....))))-)...((((.....)))))))--------)).))-))))))))))............-............. ( -32.20)
>DroEre_CAF1 103238 90 + 1
GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACUUUGCCGGCAUUAAUUGCCCGC--------UGCAC-GAGCGAGAACUACUCUAAUUAA-AGAUA--------
(((.((((((((.(((((.....((((((....))))))...((((.....)))))))--------)).))-)))))).)))............-.....-------- ( -29.60)
>DroYak_CAF1 96618 90 + 1
GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACUUUGCCGGCAUUAAUUGCCCAC--------UGCAC-GAGCGAGAACUACUCUAAUUAA-AGAUG--------
(((.((((((((.(((.((....((((((....)))))).))((((.....))))..)--------)).))-)))))).)))............-.....-------- ( -25.10)
>DroMoj_CAF1 104939 91 + 1
GUUGUGCUGCCUUCACUGGAAAUAAUGUUAUCAGGCU-G----CUUUUAAUUGCCAACUUGCCUGUAGCACUGACUGCGAAAUACUCUGC----UCGACA--------
((((.((..((......))......(((..(((((((-(----(....................))))).))))..))).........))----.)))).-------- ( -20.75)
>consensus
GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU_UGCCGGCAUUAAUUGCCCGC________UGCAC_GAGCGGCAACUACUCUAAUUAA_AGAUA________
((.((((.((((((..((((.(......).)))).....((.((((.....)))).))..............)))))))))).))....................... (-13.44 = -14.58 +   1.14) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:06 2006