Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,734,694 – 2,734,791 |
Length | 97 |
Max. P | 0.901602 |
Location | 2,734,694 – 2,734,791 |
---|---|
Length | 97 |
Sequences | 6 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 77.65 |
Mean single sequence MFE | -28.62 |
Consensus MFE | -13.44 |
Energy contribution | -14.58 |
Covariance contribution | 1.14 |
Combinations/Pair | 1.26 |
Mean z-score | -2.44 |
Structure conservation index | 0.47 |
SVM decision value | 1.02 |
SVM RNA-class probability | 0.901602 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2734694 97 + 23771897 GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU-UGCCGGCAUUAAUUGCCCGC--------UGCAC-GAGCGGCAACUACUCUAAUUAA-AGAUACAUAACUG ((((((((((((.(((((......(((((....))))-)...((((.....)))))))--------)).))-))))))))))............-............. ( -31.90) >DroSec_CAF1 94511 97 + 1 GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU-UGCCGGCAUUAAUUGCCCGC--------UGCGC-GAGCGGCAACUACUCUAAUUAA-AGAUACAUAACUU ((((((((((((.(((((......(((((....))))-)...((((.....)))))))--------)).))-))))))))))............-............. ( -32.20) >DroSim_CAF1 93313 97 + 1 GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU-UGCCGGCAUUAAUUGCCCGC--------UGCGC-GAGCGGCAACUACUCUAAUUAA-AGAUACAUAACUU ((((((((((((.(((((......(((((....))))-)...((((.....)))))))--------)).))-))))))))))............-............. ( -32.20) >DroEre_CAF1 103238 90 + 1 GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACUUUGCCGGCAUUAAUUGCCCGC--------UGCAC-GAGCGAGAACUACUCUAAUUAA-AGAUA-------- (((.((((((((.(((((.....((((((....))))))...((((.....)))))))--------)).))-)))))).)))............-.....-------- ( -29.60) >DroYak_CAF1 96618 90 + 1 GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACUUUGCCGGCAUUAAUUGCCCAC--------UGCAC-GAGCGAGAACUACUCUAAUUAA-AGAUG-------- (((.((((((((.(((.((....((((((....)))))).))((((.....))))..)--------)).))-)))))).)))............-.....-------- ( -25.10) >DroMoj_CAF1 104939 91 + 1 GUUGUGCUGCCUUCACUGGAAAUAAUGUUAUCAGGCU-G----CUUUUAAUUGCCAACUUGCCUGUAGCACUGACUGCGAAAUACUCUGC----UCGACA-------- ((((.((..((......))......(((..(((((((-(----(....................))))).))))..))).........))----.)))).-------- ( -20.75) >consensus GUUGUUGUUUGUUCAGCGGAAAUGAAGUUAUCCGACU_UGCCGGCAUUAAUUGCCCGC________UGCAC_GAGCGGCAACUACUCUAAUUAA_AGAUA________ ((.((((.((((((..((((.(......).)))).....((.((((.....)))).))..............)))))))))).))....................... (-13.44 = -14.58 + 1.14)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:06 2006