Locus 905

Sequence ID 3L_DroMel_CAF1
Location 2,732,482 – 2,732,587
Length 105
Max. P 0.999877
window1392 window1393

overview

Window 2

Location 2,732,482 – 2,732,587
Length 105
Sequences 5
Columns 105
Reading direction forward
Mean pairwise identity 96.43
Mean single sequence MFE -23.94
Consensus MFE -22.20
Energy contribution -22.20
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -1.15
Structure conservation index 0.93
SVM decision value 0.10
SVM RNA-class probability 0.581893
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2732482 105 + 23771897
UGUUCGAGCAAUUAACAACCACGGCAGGGAGCCCGAAAAAAAAUAAUUUAAACCUUCGAGGUGGAAAGGUUGGACCCCCUCGAAGGAUACACAAAUAGUACUGAU
((((.((....))))))....(((..((....))..................(((((((((.((...........)))))))))))..............))).. ( -23.10)
>DroSec_CAF1 92307 103 + 1
UGUUCGAGCAAUUAACAACCGCGGCAGGGAGCCCGAAA--AAAUAAUUUAAACCUUCGAGGUGGAAAGGUUGGACCCCCUCGAAGGAUACACAAAUAGUACUGAA
((((.((....))))))..((.(((.....)))))...--............(((((((((.((...........)))))))))))................... ( -25.10)
>DroSim_CAF1 90677 103 + 1
UGUUCGAGCAAUUAACAACCACGGCAGGGAGCCCGAAA--AAAUAAUUUAAACCUUCGAGGUGGAAAGGUUGGACCCCCUCGAAGGAUACACAAAUAGUACUGAA
((((.((....))))))....(((..((....))....--............(((((((((.((...........)))))))))))..............))).. ( -23.10)
>DroEre_CAF1 101018 102 + 1
UGUUCGAGCAAUUAACAACAACGGCAGGGAGCCCGAA---AAAUAAUUUAAACCUUCGAGGUGGAAAGGUUGGACCCCCUCGAAGGAUACAAAAAUAGUAUUGAA
..(((((((.............(((.....)))....---............(((((((((.((...........)))))))))))...........)).))))) ( -24.20)
>DroYak_CAF1 94361 102 + 1
UGUUCGAGCAAUUAACAACCACGGCAGGGAGCCCGAA---AAAUAAUUUAAACCUUCGAGGUGGAAAGGUUGGACCCCCUCGAAGGAUACAGAAAUAGUACUGAA
((((.((....)))))).....(((.....)))....---............(((((((((.((...........)))))))))))...(((........))).. ( -24.20)
>consensus
UGUUCGAGCAAUUAACAACCACGGCAGGGAGCCCGAAA__AAAUAAUUUAAACCUUCGAGGUGGAAAGGUUGGACCCCCUCGAAGGAUACACAAAUAGUACUGAA
.......((.............(((.....)))...................(((((((((.((...........)))))))))))...........))...... (-22.20 = -22.20 +  -0.00)

alignment

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secondary structure

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dotplot

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Window 3

Location 2,732,482 – 2,732,587
Length 105
Sequences 5
Columns 105
Reading direction reverse
Mean pairwise identity 96.43
Mean single sequence MFE -28.73
Consensus MFE -28.22
Energy contribution -28.06
Covariance contribution -0.16
Combinations/Pair 1.04
Mean z-score -2.37
Structure conservation index 0.98
SVM decision value 4.35
SVM RNA-class probability 0.999877
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2732482 105 - 23771897
AUCAGUACUAUUUGUGUAUCCUUCGAGGGGGUCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUUUUUUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGAACA
....((((.......))))((((((((((((.........))).)))))))))...............(((((((.....((....))........))))))).. ( -28.62)
>DroSec_CAF1 92307 103 - 1
UUCAGUACUAUUUGUGUAUCCUUCGAGGGGGUCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUU--UUUCGGGCUCCCUGCCGCGGUUGUUAAUUGCUCGAACA
....((((.......))))((((((((((((.........))).)))))))))............--.(((((((.....)))(((((.....))))).)))).. ( -29.90)
>DroSim_CAF1 90677 103 - 1
UUCAGUACUAUUUGUGUAUCCUUCGAGGGGGUCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUU--UUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGAACA
....((((.......))))((((((((((((.........))).)))))))))............--.(((((((.....((....))........))))))).. ( -28.62)
>DroEre_CAF1 101018 102 - 1
UUCAAUACUAUUUUUGUAUCCUUCGAGGGGGUCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUU---UUCGGGCUCCCUGCCGUUGUUGUUAAUUGCUCGAACA
............((((...((((((((((((.........))).)))))))))..))))......---(((((((.....((.......)).....))))))).. ( -27.90)
>DroYak_CAF1 94361 102 - 1
UUCAGUACUAUUUCUGUAUCCUUCGAGGGGGUCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUU---UUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGAACA
....((((.......))))((((((((((((.........))).)))))))))............---(((((((.....((....))........))))))).. ( -28.62)
>consensus
UUCAGUACUAUUUGUGUAUCCUUCGAGGGGGUCCAACCUUUCCACCUCGAAGGUUUAAAUUAUUU__UUUCGGGCUCCCUGCCGUGGUUGUUAAUUGCUCGAACA
....((((.......))))((((((((((((.........))).)))))))))...............(((((((.....((....))........))))))).. (-28.22 = -28.06 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:05 2006