| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 2,730,256 – 2,730,353 |
| Length | 97 |
| Max. P | 0.605578 |
| Location | 2,730,256 – 2,730,353 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 77.35 |
| Mean single sequence MFE | -27.41 |
| Consensus MFE | -18.47 |
| Energy contribution | -16.22 |
| Covariance contribution | -2.25 |
| Combinations/Pair | 1.30 |
| Mean z-score | -1.17 |
| Structure conservation index | 0.67 |
| SVM decision value | 0.15 |
| SVM RNA-class probability | 0.605578 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2730256 97 - 23771897 CAAGCGCAUUUUCUGCGUACCUAAAUGAGCAUUGGCGAAAAUAGCACCGUAUUUAGGUUUUAGGUCGC------------GA--AUUGCUCAUCGAUCUUGCGGCUCUGCU--- .....(((....(((((.......(((((((((.((((...(((.(((.......))).)))..))))------------.)--).)))))))......)))))...))).--- ( -29.02) >DroVir_CAF1 108200 110 - 1 AAGGCGCAUUUUUUGCGUACUUGAA--AGCACUUUCGAAAAUAGCGCCGUAUUUAGGUUUUAGGUCGUUCUACCAAACGCAUUCAAUGCGCAUCACU-UUGACGUU-UGCCAAG ..((((((((...(((((..(((((--(....))))))...(((.(((.......))).)))(((......)))..)))))...)))))((.((...-..)).)).-.)))... ( -25.80) >DroGri_CAF1 96934 110 - 1 AAGGCGCAUUUUUUGCGUACUUGAA--AGCACUUUCGAAAAUAGCGCCGUAUUUAGGUUUUAGGUCGUUCUACCAAACGCAUUCAAUGCGCAUCACU-UUGACGUU-UGCCAAG ..((((((((...(((((..(((((--(....))))))...(((.(((.......))).)))(((......)))..)))))...)))))((.((...-..)).)).-.)))... ( -25.80) >DroSec_CAF1 90172 97 - 1 CAAGCGCAUUUUAUGCGUACCUAAAUGAGCAUUGGCGAAAAUAGCACCGUAUUUAGGUUUUAGGUCGC------------GA--AUUGCUCAUCGAUCUUGCGGCUCUGCU--- ...((((((...))))))......(((((((((.((((...(((.(((.......))).)))..))))------------.)--).))))))).......(((....))).--- ( -28.30) >DroEre_CAF1 98783 97 - 1 CAAGCGCAUUUUCUGCGUACCUAAAUGAGCAUUGGCGAAAAUAGCACCGUAUUUAGGUUUUAGGUCGC------------GA--AUUGCUCAUCGAUCUUGCGGCUUUGCU--- .....(((....(((((.......(((((((((.((((...(((.(((.......))).)))..))))------------.)--).)))))))......)))))...))).--- ( -29.72) >DroMoj_CAF1 98588 110 - 1 AAGGCGCAUUUUUUGCGUACUUGAA--AGCACUUUCGAAAAUAGCGCCGUAUUUAGGUUUUAGGUCGUUCUACCAAACGCAUUCAAUGCGCAUCACU-UUGACGUU-UGCCAAG ..((((((((...(((((..(((((--(....))))))...(((.(((.......))).)))(((......)))..)))))...)))))((.((...-..)).)).-.)))... ( -25.80) >consensus AAAGCGCAUUUUUUGCGUACCUAAA__AGCACUGGCGAAAAUAGCACCGUAUUUAGGUUUUAGGUCGC____________AA__AAUGCGCAUCAAU_UUGACGCU_UGCC___ ..(((.........(((.(((((((...((.............))(((.......)))))))))))))...................(((((.......)).)))...)))... (-18.47 = -16.22 + -2.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:54:01 2006