Locus 900

Sequence ID	3L_DroMel_CAF1
Location	2,726,092 – 2,726,185
Length	93
Max. P	0.845214

overview

Window 4

Location	2,726,092 – 2,726,185
Length	93
Sequences	5
Columns	93
Reading direction	forward
Mean pairwise identity	98.71
Mean single sequence MFE	-23.00
Consensus MFE	-23.04
Energy contribution	-22.88
Covariance contribution	-0.16
Combinations/Pair	1.04
Mean z-score	-1.34
Structure conservation index	1.00
SVM decision value	0.77
SVM RNA-class probability	0.845214
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2726092 93 + 23771897
CCACCCAACUGCAACAUUGUCGAAUGAAAAAUUGAGAGCUUAGCGCAUUUGCUAGCAAUGUUGCCAGGGAAAACCAGCUAAAUCAGGAGCAAC
...(((....((((((((.((((.(....).))))..(((.((((....)))))))))))))))..))).......(((........)))... ( -23.80)
>DroSec_CAF1 86229 93 + 1
CCACCCAACUGCAACAUUGUCGGAUGAAAAAUUGAGAGCUUAGCGCAUUUGCUUGCAAUGUUGCCAGGGAAAACCAGCUAAAUCAGGAGCAAC
...(((....((((((((((((((((.....((((....))))..))))))...))))))))))..))).......(((........)))... ( -22.80)
>DroSim_CAF1 84440 93 + 1
CCACCCAACUGCAACAUUGUCGGAUGAAAAAUUGAGAGCUUAGCGCAUUUGCUUGCAAUGUUGCCAGGGAAAACCAGCUAAAUCAGGAGCAAC
...(((....((((((((((((((((.....((((....))))..))))))...))))))))))..))).......(((........)))... ( -22.80)
>DroEre_CAF1 94540 93 + 1
CCACCCAACUGCAACAUUGUCGGAUGAAAAAUUGAGAGCUUAGCGCAUUUGCUUGCAAUGUUGCCAGGGAAAACCAGCUAAAUCAGGAGCAAC
...(((....((((((((((((((((.....((((....))))..))))))...))))))))))..))).......(((........)))... ( -22.80)
>DroYak_CAF1 87940 93 + 1
UCACCCAACUGCAACAUUGUCGGAUGAAAAAUUGAGAGCUUAGCGCAUUUGCUUGCAAUGUUGCCAGGGAAAACCAGCUAAAUCAGGAGCAAC
...(((....((((((((((((((((.....((((....))))..))))))...))))))))))..))).......(((........)))... ( -22.80)
>consensus
CCACCCAACUGCAACAUUGUCGGAUGAAAAAUUGAGAGCUUAGCGCAUUUGCUUGCAAUGUUGCCAGGGAAAACCAGCUAAAUCAGGAGCAAC
...(((....((((((((((((((((.....((((....))))..))))))...))))))))))..))).......(((........)))... (-23.04 = -22.88 +  -0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:56 2006