| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 342,279 – 342,439 |
| Length | 160 |
| Max. P | 0.985127 |
| Location | 342,279 – 342,399 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -47.14 |
| Consensus MFE | -46.79 |
| Energy contribution | -46.57 |
| Covariance contribution | -0.22 |
| Combinations/Pair | 1.03 |
| Mean z-score | -1.33 |
| Structure conservation index | 0.99 |
| SVM decision value | -0.06 |
| SVM RNA-class probability | 0.505164 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 342279 120 + 23771897 ACGUGUCCUGAAGCUGCUUAAUCAGCACCUGGGCGCGCGCCUGGUAGCCGCCGGUGAGAAUCUUCAGCUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAU .((.(....(((((((.........((((..((((.((........))))))))))........)))))))..).))...(((((((..(((.(((((.....))))).)))))))))). ( -48.13) >DroSec_CAF1 14861 120 + 1 ACGUGUCCUGAAGCUGCUUAAUCAGCACCUGGGCACGCGCCUGGUAGCCGCCGGUGAGAAUCUUCAACUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAU .(((((((.(..((((......))))..).))))))).........((((((((..(((.((..............)))))..)).....((.(((((.....))))).))))))))... ( -46.84) >DroSim_CAF1 14438 120 + 1 ACGUGUCCUGAAGCUGCUUAAUCAGCACCUGGGCGCGCGCCUGGUAGCCGCCGGUGAGAAUCUUCAACUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAU .(((((((.(..((((......))))..).))))))).........((((((((..(((.((..............)))))..)).....((.(((((.....))))).))))))))... ( -46.44) >consensus ACGUGUCCUGAAGCUGCUUAAUCAGCACCUGGGCGCGCGCCUGGUAGCCGCCGGUGAGAAUCUUCAACUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAU .(((((((.(..((((......))))..).))))))).........((((((((..(((.((..............)))))..)).....((.(((((.....))))).))))))))... (-46.79 = -46.57 + -0.22)
| Location | 342,319 – 342,439 |
|---|---|
| Length | 120 |
| Sequences | 3 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 98.89 |
| Mean single sequence MFE | -44.53 |
| Consensus MFE | -44.53 |
| Energy contribution | -44.53 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.75 |
| Structure conservation index | 1.00 |
| SVM decision value | 2.00 |
| SVM RNA-class probability | 0.985127 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 342319 120 + 23771897 CUGGUAGCCGCCGGUGAGAAUCUUCAGCUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAUUUGUCUCCAGCCGUUUCUCGGCAGACUCUAAUCGAUCCUU (((((....))))).(((((...........)))))((((..(((((..(((.(((((.....))))).))))))))((((.((((...((((.....))))))))...))))))))... ( -44.40) >DroSec_CAF1 14901 120 + 1 CUGGUAGCCGCCGGUGAGAAUCUUCAACUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAUUUGUCUCCAGCCGUUUCUCGGCAGACUCUAAUCGAUCCUU (((((....))))).(((((...........)))))((((..(((((..(((.(((((.....))))).))))))))((((.((((...((((.....))))))))...))))))))... ( -44.40) >DroSim_CAF1 14478 120 + 1 CUGGUAGCCGCCGGUGAGAAUCUUCAACUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAUUUGUCUCCAGCCGUUUCUCGGCAGACUCUAAUCGAUCUUU (((((....))))).(((((...........)))))((((..(((((..(((.(((((.....))))).))))))))((((.((((...((((.....))))))))...))))))))... ( -44.80) >consensus CUGGUAGCCGCCGGUGAGAAUCUUCAACUUCUUCUCGAUCUUGCCGCAGCGCUUGGCUUCCUUGGCCAUGUGGCGGCGAUUUGUCUCCAGCCGUUUCUCGGCAGACUCUAAUCGAUCCUU (((((....))))).(((((...........)))))((((..(((((..(((.(((((.....))))).))))))))((((.((((...((((.....))))))))...))))))))... (-44.53 = -44.53 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:32:05 2006