Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 38,109 – 38,213 |
Length | 104 |
Max. P | 0.997828 |
Location | 38,109 – 38,213 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -38.17 |
Consensus MFE | -23.46 |
Energy contribution | -24.34 |
Covariance contribution | 0.88 |
Combinations/Pair | 1.08 |
Mean z-score | -3.20 |
Structure conservation index | 0.61 |
SVM decision value | 2.94 |
SVM RNA-class probability | 0.997828 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 38109 104 + 23771897 AGUGAUGCGAGUGCAAGUGAGAAUGCGAGUGAUAGUGGCUGUAGCAGGAGC---UAUCGUGCAGACAGUAGGAGUAGCAGCCGCAGUCGCACAUAUUUU-UGCCUUGU------------ ......(((((.((((....(((((.(.(((((.(((((((((((....))---).((.(((.....))).))...)))))))).))))).).))))))-))))))))------------ ( -36.10) >DroSec_CAF1 27648 104 + 1 AGUGAUGCGAGUGCAAAUGAGAAUGCGAGUGAUAGUGGCUGUAGCAGGAGC---UGUCAUGCAGACAGUAGGAGUAGCAGCCGCAGUCGCACAUAUUUU-CGACGUGU------------ .((..(((....)))..((((((((.(.(((((.((((((((.((....((---((((.....))))))....)).)))))))).))))).).))))))-))))....------------ ( -38.40) >DroSim_CAF1 29251 104 + 1 AGUGAUGCGAGUGCAAAUGAGAAUGCGAGUGAUAGUGGCUGUAGCAGGAGC---UGUCAUGCAGACAGUAGGAGUAGCAGCCGCAGUCGCACAUAUUUU-CCACGUGU------------ .(((.(((....)))...(((((((.(.(((((.((((((((.((....((---((((.....))))))....)).)))))))).))))).).))))))-))))....------------ ( -40.10) >DroWil_CAF1 103234 114 + 1 AAUGAUGCGAAUGCGAAUGGC------UAUGAUAGUGGCUAUAACAGGAGCUGCUGUCAUGCAGACAAUAUGAAUAGCAGCCGCAGUCGCACAUUUUUCUCGAUAAGUUGAUUUCAAUGG ((((.(((((.((((.(((((------(((....)))))))).......((((((((((((.......)))).)))))))))))).)))))))))...........((((....)))).. ( -38.10) >consensus AGUGAUGCGAGUGCAAAUGAGAAUGCGAGUGAUAGUGGCUGUAGCAGGAGC___UGUCAUGCAGACAGUAGGAGUAGCAGCCGCAGUCGCACAUAUUUU_CGACGUGU____________ .(((.(((((.(((..........((........))((((((.((.........((((.....))))......)).))))))))).)))))))).......................... (-23.46 = -24.34 + 0.88)
Location | 38,109 – 38,213 |
---|---|
Length | 104 |
Sequences | 4 |
Columns | 120 |
Reading direction | reverse |
Mean pairwise identity | 79.61 |
Mean single sequence MFE | -25.83 |
Consensus MFE | -20.66 |
Energy contribution | -20.35 |
Covariance contribution | -0.31 |
Combinations/Pair | 1.14 |
Mean z-score | -2.03 |
Structure conservation index | 0.80 |
SVM decision value | 1.42 |
SVM RNA-class probability | 0.952046 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 38109 104 - 23771897 ------------ACAAGGCA-AAAAUAUGUGCGACUGCGGCUGCUACUCCUACUGUCUGCACGAUA---GCUCCUGCUACAGCCACUAUCACUCGCAUUCUCACUUGCACUCGCAUCACU ------------.....(((-(......((((((.((.(((((.........(((((.....))))---).........))))).....)).))))))......))))............ ( -23.27) >DroSec_CAF1 27648 104 - 1 ------------ACACGUCG-AAAAUAUGUGCGACUGCGGCUGCUACUCCUACUGUCUGCAUGACA---GCUCCUGCUACAGCCACUAUCACUCGCAUUCUCAUUUGCACUCGCAUCACU ------------........-.......((((((....(((((.........(((((.....))))---).........)))))..........(((........)))..)))))).... ( -24.97) >DroSim_CAF1 29251 104 - 1 ------------ACACGUGG-AAAAUAUGUGCGACUGCGGCUGCUACUCCUACUGUCUGCAUGACA---GCUCCUGCUACAGCCACUAUCACUCGCAUUCUCAUUUGCACUCGCAUCACU ------------.((((((.-....)))))).((.((((((((.........(((((.....))))---).........)))))..........(((........)))....)))))... ( -26.87) >DroWil_CAF1 103234 114 - 1 CCAUUGAAAUCAACUUAUCGAGAAAAAUGUGCGACUGCGGCUGCUAUUCAUAUUGUCUGCAUGACAGCAGCUCCUGUUAUAGCCACUAUCAUA------GCCAUUCGCAUUCGCAUCAUU .........................(((((((((.(((((..(((((..(((.((...(((((((((......))))))).)))).))).)))------))...))))).))))).)))) ( -28.20) >consensus ____________ACACGUCG_AAAAUAUGUGCGACUGCGGCUGCUACUCCUACUGUCUGCAUGACA___GCUCCUGCUACAGCCACUAUCACUCGCAUUCUCAUUUGCACUCGCAUCACU ............................((((((.((((((((..........((((.....))))...((....))..)))))..........(......)....))).)))))).... (-20.66 = -20.35 + -0.31)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:48 2006