Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,709,744 – 2,709,836 |
Length | 92 |
Max. P | 0.740751 |
Location | 2,709,744 – 2,709,836 |
---|---|
Length | 92 |
Sequences | 4 |
Columns | 95 |
Reading direction | reverse |
Mean pairwise identity | 86.63 |
Mean single sequence MFE | -22.20 |
Consensus MFE | -16.97 |
Energy contribution | -17.09 |
Covariance contribution | 0.13 |
Combinations/Pair | 1.05 |
Mean z-score | -1.73 |
Structure conservation index | 0.76 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740751 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2709744 92 - 23771897 ---CUUAAAUUGCACACUGAAUGCACACCAACCGCAGAAGUCGAAAGUGCAGGAUACCGAAAGAGAACUAUGCACUACUGUGCACUGUGAAAAAU ---.(((...((((((((...(((.........)))..)))....((((((.....((....).).....))))))...)))))...)))..... ( -20.00) >DroSec_CAF1 70512 92 - 1 ---CUUAGAUUGCACACUUAAUGCACACCAACCGCAGAAGUCGAGAGUGCAGAAUGCCAAAAGAGAACUAUGCACUUCUGUGCACUGUUGAAAAU ---......((((((.(((..(((.........)))......))).)))))).............(((..(((((....)))))..)))...... ( -19.00) >DroEre_CAF1 77594 91 - 1 ---CAUAGAUUGCACACUGAAUGCGCACCAACCGCAGAAGUCGAAAGUGCAGAAUGCCAA-GGAAAACUAUGCACUUACGUGCACUGUGAAAAAU ---(((((..((((((((...((((.......))))..))).(.(((((((.....(...-.).......))))))).)))))))))))...... ( -25.80) >DroYak_CAF1 71190 95 - 1 GUACUUAGAUUGCACACUGAAUGCACAGCAACCGCAGAAGUCGAAAGUGCAGAAUGCCAACAGAGAGGUAUGCACUUACGUGCACUGUAAACAAU ....(((.(.((((((((...(((.........)))..))).(.(((((((...((((........))))))))))).)))))).).)))..... ( -24.00) >consensus ___CUUAGAUUGCACACUGAAUGCACACCAACCGCAGAAGUCGAAAGUGCAGAAUGCCAAAAGAGAACUAUGCACUUACGUGCACUGUGAAAAAU ..........((((((((...(((.........)))..)))...(((((((......(....).......)))))))..)))))........... (-16.97 = -17.09 + 0.13)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:48 2006