Locus 893

Sequence ID 3L_DroMel_CAF1
Location 2,706,468 – 2,706,574
Length 106
Max. P 0.837220
window1372

overview

Window 2

Location 2,706,468 – 2,706,574
Length 106
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 79.04
Mean single sequence MFE -37.70
Consensus MFE -20.65
Energy contribution -23.15
Covariance contribution 2.50
Combinations/Pair 1.21
Mean z-score -2.19
Structure conservation index 0.55
SVM decision value 0.74
SVM RNA-class probability 0.837220
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2706468 106 + 23771897
-CUGCUGGAAGCAUAACACCCGGCGCACUGGGCGCUGGGAUGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUUAGCAGACAGUUUUGCUGCUCCAACAUCAG
-.((.((((((((...((((((((((.....)))))))).))..((((((..(((.((((((((((.....)))))))))))))))))))))))..)))).)).... ( -43.00)
>DroPse_CAF1 87330 95 + 1
GCUGCUG------------CUGCUGUAUUGGACGAGGGCAGUAUGGACUGAUUUUUGUUAAGGUUCUCCAGAAACUUGAGCAGGCAGUUCUGCUGCUCCAACAUCAG
((....)------------)..(((...((...(.((((((((.((((((....((((((((.(((....))).))))).))).)))))))))))))))..)).))) ( -27.80)
>DroEre_CAF1 74337 106 + 1
-CUGCUGGAAGCAUAACACCCGGCGCACUGGGCGCUGGGAUGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUGAGCAGACAGUUUUGCUGCUCCAACAUCAG
-.((.((((((((...((((((((((.....)))))))).))..((((((..(((.(((.((((((.....)))))).))))))))))))))))..)))).)).... ( -41.10)
>DroYak_CAF1 67961 106 + 1
-CUGCUGGAAGCAUAACACCCGGCGCACUGGGCGCUGGGAUGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUGAGCAGACAGUUCUGCUGCUCCAACAUCAA
-.((.((((((((...((((((((((.....)))))))).))..((((((..(((.(((.((((((.....)))))).))))))))))))))))..)))).)).... ( -43.40)
>DroAna_CAF1 66807 97 + 1
----GCGGAAGCGCA------GCCGCGCUGCUCGGUGGGAGUAUGGACUGGUUCUUGUUCAGGUUCUCCAGGAACUUCAAGAGGCAGUUCUGCUGCUCCAACAUCAA
----((....))(((------((...)))))..((((((((((.((((((.((((((...((((((.....)))))))))))).))))))...))))))..)))).. ( -43.30)
>DroPer_CAF1 88072 95 + 1
GCUGCUG------------CUGCUGUAUUGGACGAGGGCAGUAUGGACUGAUUUUUGUUAAGGUUCUCCAGAAACUUGAGCAGGCAGUUCUGCUGCUCCAACAUCAA
((.((..------------..)).)).......(.((((((((.((((((....((((((((.(((....))).))))).))).)))))))))))))))........ ( -27.60)
>consensus
_CUGCUGGAAGCAUA____CCGCCGCACUGGGCGCUGGGAGGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUGAGCAGACAGUUCUGCUGCUCCAACAUCAA
..((.((((.(((......(((((((.....)))))))......((((((....(((((.((((((.....)))))).))))).))))))...))))))).)).... (-20.65 = -23.15 +   2.50) 

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript


Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006