Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,706,468 – 2,706,574 |
Length | 106 |
Max. P | 0.837220 |
Location | 2,706,468 – 2,706,574 |
---|---|
Length | 106 |
Sequences | 6 |
Columns | 107 |
Reading direction | forward |
Mean pairwise identity | 79.04 |
Mean single sequence MFE | -37.70 |
Consensus MFE | -20.65 |
Energy contribution | -23.15 |
Covariance contribution | 2.50 |
Combinations/Pair | 1.21 |
Mean z-score | -2.19 |
Structure conservation index | 0.55 |
SVM decision value | 0.74 |
SVM RNA-class probability | 0.837220 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2706468 106 + 23771897 -CUGCUGGAAGCAUAACACCCGGCGCACUGGGCGCUGGGAUGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUUAGCAGACAGUUUUGCUGCUCCAACAUCAG -.((.((((((((...((((((((((.....)))))))).))..((((((..(((.((((((((((.....)))))))))))))))))))))))..)))).)).... ( -43.00) >DroPse_CAF1 87330 95 + 1 GCUGCUG------------CUGCUGUAUUGGACGAGGGCAGUAUGGACUGAUUUUUGUUAAGGUUCUCCAGAAACUUGAGCAGGCAGUUCUGCUGCUCCAACAUCAG ((....)------------)..(((...((...(.((((((((.((((((....((((((((.(((....))).))))).))).)))))))))))))))..)).))) ( -27.80) >DroEre_CAF1 74337 106 + 1 -CUGCUGGAAGCAUAACACCCGGCGCACUGGGCGCUGGGAUGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUGAGCAGACAGUUUUGCUGCUCCAACAUCAG -.((.((((((((...((((((((((.....)))))))).))..((((((..(((.(((.((((((.....)))))).))))))))))))))))..)))).)).... ( -41.10) >DroYak_CAF1 67961 106 + 1 -CUGCUGGAAGCAUAACACCCGGCGCACUGGGCGCUGGGAUGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUGAGCAGACAGUUCUGCUGCUCCAACAUCAA -.((.((((((((...((((((((((.....)))))))).))..((((((..(((.(((.((((((.....)))))).))))))))))))))))..)))).)).... ( -43.40) >DroAna_CAF1 66807 97 + 1 ----GCGGAAGCGCA------GCCGCGCUGCUCGGUGGGAGUAUGGACUGGUUCUUGUUCAGGUUCUCCAGGAACUUCAAGAGGCAGUUCUGCUGCUCCAACAUCAA ----((....))(((------((...)))))..((((((((((.((((((.((((((...((((((.....)))))))))))).))))))...))))))..)))).. ( -43.30) >DroPer_CAF1 88072 95 + 1 GCUGCUG------------CUGCUGUAUUGGACGAGGGCAGUAUGGACUGAUUUUUGUUAAGGUUCUCCAGAAACUUGAGCAGGCAGUUCUGCUGCUCCAACAUCAA ((.((..------------..)).)).......(.((((((((.((((((....((((((((.(((....))).))))).))).)))))))))))))))........ ( -27.60) >consensus _CUGCUGGAAGCAUA____CCGCCGCACUGGGCGCUGGGAGGAUGGACUGAUUCUUGUUGAGGUUCUCCAGGAACUUGAGCAGACAGUUCUGCUGCUCCAACAUCAA ..((.((((.(((......(((((((.....)))))))......((((((....(((((.((((((.....)))))).))))).))))))...))))))).)).... (-20.65 = -23.15 + 2.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:45 2006