Locus 892

Sequence ID 3L_DroMel_CAF1
Location 2,705,417 – 2,705,512
Length 95
Max. P 0.873350
window1371

overview

Window 1

Location 2,705,417 – 2,705,512
Length 95
Sequences 6
Columns 95
Reading direction forward
Mean pairwise identity 78.95
Mean single sequence MFE -29.03
Consensus MFE -21.45
Energy contribution -20.73
Covariance contribution -0.72
Combinations/Pair 1.41
Mean z-score -1.62
Structure conservation index 0.74
SVM decision value 0.88
SVM RNA-class probability 0.873350
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2705417 95 + 23771897
CUAUUGCCUCCAGUAGCUUUCACUGUCACUUUGGCGGGAAAAUUCUUCUCCACUUGCUGCGGCAUUACAGUCAGUGUUUGCUGCGGCCCAUUCGA
((((((....)))))).((((.(((((.....)))))))))..............(((((((((.(((.....)))..)))))))))........ ( -27.30)
>DroGri_CAF1 70858 91 + 1
CCGCUGUCGCCGGUU-GCUUCACGGUCACCUUAGCUGGUAUGGUUUUCUCCA---GCUGUGGCAGCACUGUUAAUGUUUGCUGCGGCCCAUUUGC
..((((((((.(((.-(((....))).)))..((((((...........)))---)))))))))))...((.((((...((....)).)))).)) ( -28.20)
>DroSec_CAF1 66173 95 + 1
CUGUUGCCUCCAGUAGCUUUCACCGUCACUUUGGCGGAAACAUUCUUCUCCACCUGCUGCGGCAUUACAGUCAGUGUUUGCUGCGGCCCAUUCGA
..(((((.....))))).....(((((.....)))))..................(((((((((.(((.....)))..)))))))))........ ( -27.20)
>DroEre_CAF1 73289 95 + 1
UUGUUGCCUCCAGUAGCUUUUACCGUCACUUUGGCGGGCACAUUCUUCUCCACCUGCUGCGGCAUCACAGUUAGUGUUUGCUGCGGCCCAUUUGA
..(((((.....))))).....(((((.....)))))..................(((((((((.(((.....)))..)))))))))........ ( -29.20)
>DroWil_CAF1 79457 89 + 1
--GUGG----CAGUAGCUUUUACUGCCACCUUGGCGGGAAUCGAUUUCUCCAAUUGCUGCGGCAACACGGUCAAUGUCUGCUGUGGUCCAUUAGG
--((((----((((((...))))))))))..(((.(((((.....))).))....((..((((((((.......))).)))))..)))))..... ( -30.40)
>DroYak_CAF1 66913 95 + 1
UUGUUGCCUCCAGUAGCUUUCACCGUCACUUUGGCGGGCACAUUCUUCUCCACCUGCUGCGGCAUCACAGUUAGUGUCUGCUGCGGCCCAUUGGA
..(((((.....))))).....(((((.....)))))...........((((...(((((((((.(((.....)))..)))))))))....)))) ( -31.90)
>consensus
CUGUUGCCUCCAGUAGCUUUCACCGUCACUUUGGCGGGAACAUUCUUCUCCACCUGCUGCGGCAUCACAGUCAGUGUUUGCUGCGGCCCAUUCGA
......................(((((.....)))))..................(((((((((.(((.....)))..)))))))))........ (-21.45 = -20.73 +  -0.72)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:44 2006