Locus 891

Sequence ID	3L_DroMel_CAF1
Location	2,698,396 – 2,698,489
Length	93
Max. P	0.874893

overview

Window 0

Location	2,698,396 – 2,698,489
Length	93
Sequences	5
Columns	93
Reading direction	reverse
Mean pairwise identity	89.89
Mean single sequence MFE	-29.20
Consensus MFE	-24.24
Energy contribution	-24.88
Covariance contribution	0.64
Combinations/Pair	1.04
Mean z-score	-1.69
Structure conservation index	0.83
SVM decision value	0.89
SVM RNA-class probability	0.874893
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2698396 93 - 23771897
AGUUGUAGCCAUUGAAAGUGCGCAAAGGAUUAUGCCUGGUCGUCGGAUUUUAGCUCUCCGACCGCCGCCCUUGGUCCUUUGGCACUUUUUUUG
.........((..((((((((.((((((((((.(..((((.((((((.........)))))).))))..).))))))))))))))))))..)) ( -38.60)
>DroSec_CAF1 59278 93 - 1
AGUUGUACCCAUUGAAAGUGGGAAAAGGAUUAUGCCUGGUCCUCGGACUUUAGCUCUCCGACCGCCGCCCUUGGUCCUUUGGCACUUUUUUCG
...(((.(((((.....))))).(((((((((.(..((((..(((((.........)))))..))))..).))))))))).)))......... ( -26.80)
>DroSim_CAF1 58174 93 - 1
AGUUGUAGCCAUUGAAAGUGGGCAAAGGAUUAUGCCUGGUCCUCGGACUUUAGCUCUCCGACCGCCGCCCUUGGUCCUUUGGCACUUUUUUCG
.............((((((.(.((((((((((.(..((((..(((((.........)))))..))))..).)))))))))).))))))).... ( -28.50)
>DroEre_CAF1 64187 88 - 1
AGUUGUAGCCAUUGAAAGUGGGCA-AGGAUUAUGCCCGGUCCUCGGACCUC----CACCGACUGCCACCCUUGGUCCUUUGGCACUUUUUUCA
.......((((..(..((((((((-.......)))))((((....))))..----.....)))((((....)))).)..)))).......... ( -25.40)
>DroYak_CAF1 59893 93 - 1
AGUUGUAGCCAUUGAAAGUGGGCAAAGGAUUAUGCUUGGUCCUUGGACCUCUCCUCUCCGACUGCCGCCCUUGGUCCUUUGGCACUUUUUUCA
.............((((((.(.((((((((((.(..((((..(((((.........)))))..))))..).)))))))))).))))))).... ( -26.70)
>consensus
AGUUGUAGCCAUUGAAAGUGGGCAAAGGAUUAUGCCUGGUCCUCGGACUUUAGCUCUCCGACCGCCGCCCUUGGUCCUUUGGCACUUUUUUCG
.............(((((((..((((((((((....((((..(((((.........)))))..))))....)))))))))).))))))).... (-24.24 = -24.88 +   0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:53:43 2006